Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0230.Seq
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   4.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   6.2  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   6.2  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   8.1  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   8.1  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 158 VNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPRTINKSCRLLN 283
           ++K+ N  NF+  +  L++     YQ  V    INK   ++N
Sbjct: 55  LSKVLNQPNFRFLEMDLATNYKFLYQFMVEDSEINKITHIIN 96


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 146 VENHVNKIQNSVNFKMFKHQLSSRN 220
           V  H N   NS N K++ +QLS +N
Sbjct: 156 VHPHTNTNANSNNLKVYANQLSQQN 180


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 244 YCCLIRVNITRRKLMLEHLEVDRVLD 167
           YC ++++NI + KL+L   EVD + D
Sbjct: 181 YCSIVKINIGKSKLILAG-EVDCIWD 205


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 317 THQCIXPALIVQYQKTHINYHSTMLVEGMMI 409
           TH+ +  A I+Q  + H N  S+ LVE M +
Sbjct: 209 THKVLLDANIIQLLRQHSNPFSSTLVELMTV 239


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 78  ILYLCV-HHIYANLCILNRRNLWPT 7
           +L++C+ H++YAN C    + + PT
Sbjct: 242 VLFVCLGHYLYANACSKGEQLIVPT 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,394
Number of Sequences: 5004
Number of extensions: 42588
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)