Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0230.Seq
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0247 + 10925329-10925566,10925744-10926357,10926723-109272...    31   0.51 
05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448...    31   0.68 
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    28   4.8  
11_02_0087 + 8188009-8188241,8188313-8188423,8188492-8188570,818...    28   4.8  
12_02_0482 + 19541017-19541139,19542687-19542765,19542971-195430...    28   6.3  
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    28   6.3  
11_04_0032 + 12545208-12545954                                         27   8.3  

>05_03_0247 +
           10925329-10925566,10925744-10926357,10926723-10927238,
           10927376-10927504
          Length = 498

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 450 WXEFRKAQKVHMQDAYCFPHVLQHFHC 530
           W  FR   +VH  DA  FP+   H +C
Sbjct: 360 WHTFRNGTRVHRTDAARFPYAAYHMYC 386


>05_03_0248 +
           10942363-10942612,10942702-10943345,10944301-10944816,
           10945085-10945237,10945545-10945637
          Length = 551

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 450 WXEFRKAQKVHMQDAYCFPHVLQHFHC 530
           W  FR   +VH  DA  FP+   H +C
Sbjct: 374 WHTFRNGTRVHRTDAARFPYAAYHVYC 400


>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 QQPTGFVDCSRYYCCLIRVN 221
           +QP G V C  YYC  +RVN
Sbjct: 645 KQPVGTVLCGYYYCEFLRVN 664


>11_02_0087 +
           8188009-8188241,8188313-8188423,8188492-8188570,
           8188662-8188754,8188877-8188897
          Length = 178

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 280 QQPTGFVDCSRYYCCLIRVN 221
           +QP G V C  YYC  +RVN
Sbjct: 144 KQPVGTVLCGYYYCEFLRVN 163


>12_02_0482 +
           19541017-19541139,19542687-19542765,19542971-19543025,
           19543179-19543268,19543344-19543413,19543580-19543850,
           19543969-19544026,19544113-19544237,19544326-19544397,
           19544484-19544617
          Length = 358

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 373 IDMRFLILNYQCXX--DTLMGLYHQPMET*LFVQQPTGFVDCSRYY 242
           ++ R +   Y+C    +T++  Y+QP++  ++ +Q T F + S YY
Sbjct: 179 LNFRAIKRQYECFFTRNTIVESYNQPLQFPIYPKQLTEFGELSAYY 224


>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
            27739775-27739832,27739923-27740038,27740117-27740237,
            27740348-27740635,27740817-27740987,27741091-27741741,
            27742515-27742676,27742764-27743904,27743992-27744152,
            27744239-27744564,27745678-27745825
          Length = 1296

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 122  HSFSSCLFVENHVNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPR 253
            +  S   F E  + K+ +  NFK+F+H LS  +V ++  TV+ +
Sbjct: 1124 YCLSQLTFTEKGLKKLVD--NFKIFEHALSEDSVMNHFRTVIAK 1165


>11_04_0032 + 12545208-12545954
          Length = 248

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 235 LIRVNITRRKLMLEHLEVDRVLDFVYMI 152
           + +VN  R K+ L+ LEVDR LD V ++
Sbjct: 209 IFKVNGHRLKVFLDPLEVDRDLDVVNLV 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,994,698
Number of Sequences: 37544
Number of extensions: 248911
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)