Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0230.Seq
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    29   1.8  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   9.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   9.8  

>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 126 LCYFGHE*LIIQSFEYILYLCVHHIYANLCILNRRN 19
           LC+FGH  L   S+  +L+L +H +++ L     RN
Sbjct: 79  LCHFGHPFLCYASWSALLHLFIHSMWSLLLSFAYRN 114


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 262  VDCSRYYCCLIRVNITRRKLMLEHL 188
            V CSR+ C   R +   +K M EHL
Sbjct: 2205 VACSRFLCYFCRTSRQNQKAMFEHL 2229


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 262  VDCSRYYCCLIRVNITRRKLMLEHL 188
            V CSR+ C   R +   +K M EHL
Sbjct: 2326 VACSRFLCYFCRTSRQNQKAMFEHL 2350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,566
Number of Sequences: 27780
Number of extensions: 240992
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)