Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0230.Seq
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.96 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 259 QQILSAAEQRAKFPWA-DDINPSVYXAXTDSSISENAYQLPQY 384
           QQ     +Q+ + P   DD NP++    +DS+      ++P Y
Sbjct: 845 QQQQQQQQQQQRGPMTNDDFNPNIEEEASDSAQGRAILKIPSY 887


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 512 NMWETICVLHMNF 474
           ++W T+CVL+++F
Sbjct: 326 SIWITVCVLNVHF 338


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 60  HHIYANLCILNRRNLWPTG 4
           +H+Y NL  L +R++   G
Sbjct: 462 YHLYTNLTALRKRDVLKKG 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,710
Number of Sequences: 438
Number of extensions: 3204
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)