Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0230.Seq
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01910.1 68415.m00125 microtubule associated protein (MAP65/A...    28   4.0  
At1g70505.1 68414.m08114 expressed protein                             27   7.0  

>At2g01910.1 68415.m00125 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 567

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 152 NHVNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPRTINKSCRLLNKELSF 298
           +H+NK  N ++  + +  L+ RN++ YQT +      KS R LNK L +
Sbjct: 107 DHLNKAMN-ISLTLEEQDLTLRNLNEYQTHLRTLQKEKSDR-LNKVLGY 153


>At1g70505.1 68414.m08114 expressed protein
          Length = 338

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 440 RRNMAGVQESTKSSYARRILFPTCSSAFSL 529
           R NM+  Q +T   Y  +ILF TC+ A  L
Sbjct: 198 RENMSTRQVATTLGYIHQILFQTCAGAVLL 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,435
Number of Sequences: 28952
Number of extensions: 211932
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)