Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0229.Seq
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   2.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   2.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.4  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   8.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 326 RHQYCQSWILQVARQRQTPQT 388
           RH   ++W+    R + TPQ+
Sbjct: 237 RHLERKAWVASFGRPKMTPQS 257


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 175 HPGYFGKLGMRNFHFRKNKNFC 240
           HP YFGK G +     K   +C
Sbjct: 303 HPTYFGKTGRKT--VLKTNKYC 322


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 246 NWTEILVLSKVEISHTKF 193
           +WTEI   + V  S TKF
Sbjct: 60  SWTEINAFANVSPSKTKF 77


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 266 DISL*TDEAEVCICSRWQGPRHQYCQ 343
           D+S    E + CI  + Q  R QYC+
Sbjct: 117 DLSYACREEKNCIIDKRQRNRCQYCR 142


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 397 MTGCLGSLPLPSNL*YPALTILMTGTL 317
           MTG    +P  S + Y    ILM GT+
Sbjct: 271 MTGTKTVMPSQSAIKYRKQVILMLGTV 297


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 128 PRPPGCLRCFPIRP 87
           P P G L  +P RP
Sbjct: 65  PSPRGALGAYPFRP 78


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 264 WTLVSEQTRLK 296
           WT++S  TR+K
Sbjct: 54  WTVISASTRIK 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,115
Number of Sequences: 336
Number of extensions: 2038
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)