Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0229.Seq
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 85 2e-17
03_04_0027 + 16593133-16593573 84 4e-17
02_01_0563 + 4134954-4135388 84 4e-17
01_01_0433 + 3282195-3285185 33 0.12
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 4.6
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 4.6
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789... 27 6.1
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 6.1
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 8.1
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 27 8.1
01_06_0884 + 32715963-32716284,32716837-32717567 27 8.1
>07_03_1250 - 25183375-25183815
Length = 146
Score = 85.0 bits (201), Expect = 2e-17
Identities = 39/75 (52%), Positives = 45/75 (60%)
Frame = +1
Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
M TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 211 FHFRKNKNFCPVLNL 255
FH +NK + P +N+
Sbjct: 61 FHRLRNKFYSPAVNV 75
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/55 (21%), Positives = 31/55 (56%)
Frame = +3
Query: 252 LDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIXKSKVL 416
+++LW++V + + A A GK P++++ + P++P++ K+K++
Sbjct: 75 VERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLI 127
>03_04_0027 + 16593133-16593573
Length = 146
Score = 84.2 bits (199), Expect = 4e-17
Identities = 39/75 (52%), Positives = 43/75 (57%)
Frame = +1
Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 211 FHFRKNKNFCPVLNL 255
FH N+ CP +N+
Sbjct: 61 FHKLSNRFHCPAVNV 75
>02_01_0563 + 4134954-4135388
Length = 144
Score = 84.2 bits (199), Expect = 4e-17
Identities = 39/75 (52%), Positives = 43/75 (57%)
Frame = +1
Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 211 FHFRKNKNFCPVLNL 255
FH N+ CP +N+
Sbjct: 61 FHRLSNRFHCPAVNV 75
>01_01_0433 + 3282195-3285185
Length = 996
Score = 32.7 bits (71), Expect = 0.12
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 150 SQNQ-HGQVPSWILWQTWYEKFPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVP 326
S NQ +G +P W W+TW E F L +S D L L + L Y + +G +P
Sbjct: 524 SNNQMNGAIPPWA-WETWKESFFLDLSNNKFTSLGHDTLLPLYTRYINLSY-NMFEGPIP 581
Query: 327 V 329
+
Sbjct: 582 I 582
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 4.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 157 FCDGAHHQHYHDLLDAYG 104
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 140 PPALPRPPGCLRCFPIRPCP 81
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>10_08_0075 -
14676835-14677173,14677776-14678426,14678734-14678948,
14679510-14679783,14680249-14680410
Length = 546
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -3
Query: 312 LEQMHTSASSVQRLMSKAYQVQNWTEILVLSKVEISHTKFAKVSRMVLVH 163
+E+M+ + R +S + +N+T ++ L+ + + K KVSR LV+
Sbjct: 309 VEEMNQLTFQLNRYISDVSKDENFTNLMSLADLSMMLVKTNKVSRYDLVY 358
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 143 SPP-ALPRPPGCLRCFPIRPCP 81
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 136 GGEHHHRINMDKYH 177
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 154 CDGAHHQHYHDLLDAYGAFRYDHVRD*HDLSAS-*SSFLR 38
C G HH H+H L G+ + ++ H+L+ S +SFL+
Sbjct: 165 CYGEHHHHHHHQLTKEGSCNHQQ-QEQHELAISPMASFLQ 203
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 149 WCSPPALPRPPGCLRCFP 96
WC PA+P+ RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,457,757
Number of Sequences: 37544
Number of extensions: 232742
Number of successful extensions: 686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -