Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0229.Seq
         (419 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...    97   3e-20
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...    97   3e-20
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...    97   3e-20
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...    97   3e-20
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...    96   5e-20
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...    94   2e-19
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    43   5e-04
AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.             29   4.8  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 40/75 (53%), Positives = 51/75 (68%)
 Frame = +1

Query: 31  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 211 FHFRKNKNFCPVLNL 255
           +H ++N++FCP +NL
Sbjct: 61  YHLKRNQSFCPTVNL 75



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/67 (43%), Positives = 39/67 (58%)
 Frame = +3

Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389
           + L + Q F  +  LDKLWTLVSEQTR+  A    G  P+I++V++           PKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 390 PVIXKSK 410
           PVI K+K
Sbjct: 121 PVIVKAK 127


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 40/75 (53%), Positives = 51/75 (68%)
 Frame = +1

Query: 31  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 211 FHFRKNKNFCPVLNL 255
           +H ++N++FCP +NL
Sbjct: 61  YHLKRNQSFCPTVNL 75



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/67 (43%), Positives = 39/67 (58%)
 Frame = +3

Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389
           + L + Q F  +  LDKLWTLVSEQTR+  A    G  P+I++V++           PKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 390 PVIXKSK 410
           PVI K+K
Sbjct: 121 PVIVKAK 127


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 40/75 (53%), Positives = 51/75 (68%)
 Frame = +1

Query: 31  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 211 FHFRKNKNFCPVLNL 255
           +H ++N++FCP +NL
Sbjct: 61  YHLKRNQSFCPTVNL 75



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 30/46 (65%)
 Frame = +3

Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 347
           + L + Q F  +  LDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 40/75 (53%), Positives = 51/75 (68%)
 Frame = +1

Query: 31  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 211 FHFRKNKNFCPVLNL 255
           +H ++N++FCP +NL
Sbjct: 61  YHLKRNQSFCPTVNL 75



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/67 (43%), Positives = 39/67 (58%)
 Frame = +3

Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389
           + L + Q F  +  LDKLWTLVSEQTR+  A    G  P+I++V++           PKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 390 PVIXKSK 410
           PVI K+K
Sbjct: 121 PVIVKAK 127


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score = 95.9 bits (228), Expect = 5e-20
 Identities = 39/70 (55%), Positives = 49/70 (70%)
 Frame = +1

Query: 46  KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 225
           +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64

Query: 226 NKNFCPVLNL 255
           N++FCP +NL
Sbjct: 65  NQSFCPTVNL 74



 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/67 (43%), Positives = 39/67 (58%)
 Frame = +3

Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389
           + L + Q F  +  LDKLWTLVSEQTR+  A    G  P+I++V++           PKQ
Sbjct: 60  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 119

Query: 390 PVIXKSK 410
           PVI K+K
Sbjct: 120 PVIVKAK 126


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score = 93.9 bits (223), Expect = 2e-19
 Identities = 39/75 (52%), Positives = 51/75 (68%)
 Frame = +1

Query: 31  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210
           M +  +KTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 211 FHFRKNKNFCPVLNL 255
           ++ ++N++FCP +NL
Sbjct: 61  YNLKRNQSFCPTVNL 75



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 39/68 (57%)
 Frame = +3

Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389
           + L + Q F  +  LDKLWTLVSEQTR+  A    G  P+I++V++            KQ
Sbjct: 61  YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120

Query: 390 PVIXKSKV 413
           PVI K+K+
Sbjct: 121 PVIVKAKL 128


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 252 LDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 347
           LDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 3   LDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


>AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 200 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 48
           P+LPK+PG  ++ L   W S    P P G +    + PCP       PL FLV+
Sbjct: 55  PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,284,982
Number of Sequences: 237096
Number of extensions: 1303075
Number of successful extensions: 2736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2729
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)