Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0229.Seq
         (419 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.      95   3e-20
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...    95   3e-20
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...    95   3e-20
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...    95   3e-20
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...    93   1e-19
BT029727-1|ABL75784.1|  288|Drosophila melanogaster IP17596p pro...    31   0.83 
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   5.8  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   5.8  
X67704-1|CAA47941.1|  334|Drosophila melanogaster sperm protein ...    27   7.7  
AY060667-1|AAL28215.1|  334|Drosophila melanogaster GH09231p pro...    27   7.7  
AE014297-4221|AAF56779.1|  334|Drosophila melanogaster CG11719-P...    27   7.7  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 51/125 (40%), Positives = 63/125 (50%)
 Frame = +1

Query: 43  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 222
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 223 KNKNFCPVLNLISFGH*SLNRRG*SMHLLQMARSPSSILSKLDTTSC*AKANSPNNLSXV 402
           +   F P +NL          +   +   +  ++P   L K        + + P     V
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 403 KAKFF 417
           KAK+F
Sbjct: 126 KAKYF 130


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 51/125 (40%), Positives = 63/125 (50%)
 Frame = +1

Query: 43  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 222
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 223 KNKNFCPVLNLISFGH*SLNRRG*SMHLLQMARSPSSILSKLDTTSC*AKANSPNNLSXV 402
           +   F P +NL          +   +   +  ++P   L K        + + P     V
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 403 KAKFF 417
           KAK+F
Sbjct: 126 KAKYF 130


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 51/125 (40%), Positives = 63/125 (50%)
 Frame = +1

Query: 43  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 222
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 223 KNKNFCPVLNLISFGH*SLNRRG*SMHLLQMARSPSSILSKLDTTSC*AKANSPNNLSXV 402
           +   F P +NL          +   +   +  ++P   L K        + + P     V
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 403 KAKFF 417
           KAK+F
Sbjct: 126 KAKYF 130


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 51/125 (40%), Positives = 63/125 (50%)
 Frame = +1

Query: 43  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 222
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 223 KNKNFCPVLNLISFGH*SLNRRG*SMHLLQMARSPSSILSKLDTTSC*AKANSPNNLSXV 402
           +   F P +NL          +   +   +  ++P   L K        + + P     V
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 403 KAKFF 417
           KAK+F
Sbjct: 126 KAKYF 130


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 50/125 (40%), Positives = 62/125 (49%)
 Frame = +1

Query: 43  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 222
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 223 KNKNFCPVLNLISFGH*SLNRRG*SMHLLQMARSPSSILSKLDTTSC*AKANSPNNLSXV 402
           +   F P +NL          +   +   +  ++P   L K        + + P     V
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 403 KAKFF 417
           KAK+F
Sbjct: 126 KAKYF 130


>BT029727-1|ABL75784.1|  288|Drosophila melanogaster IP17596p
           protein.
          Length = 288

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = -2

Query: 292 SLVCSETNVQSLSSSKLDRNSCSF*SG----NFSYQVCQSI--QDGTCPC 161
           ++ CS +N Q ++SSK D N CS  +G    N +  +C  I      CPC
Sbjct: 100 NISCSSSNTQPITSSKSDCN-CSHSAGTQSCNCNCNICNKINCSSSNCPC 148


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 136 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 234
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 136 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 234
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>X67704-1|CAA47941.1|  334|Drosophila melanogaster sperm protein
           protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 146 CSPPALPRPPGCLRCFPIRPCP 81
           CSPP     P C  C+P  P P
Sbjct: 290 CSPPCPYESPECGPCYPCAPTP 311


>AY060667-1|AAL28215.1|  334|Drosophila melanogaster GH09231p
           protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 146 CSPPALPRPPGCLRCFPIRPCP 81
           CSPP     P C  C+P  P P
Sbjct: 290 CSPPCPYESPECGPCYPCAPTP 311


>AE014297-4221|AAF56779.1|  334|Drosophila melanogaster CG11719-PA
           protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 146 CSPPALPRPPGCLRCFPIRPCP 81
           CSPP     P C  C+P  P P
Sbjct: 290 CSPPCPYESPECGPCYPCAPTP 311


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,262
Number of Sequences: 53049
Number of extensions: 389602
Number of successful extensions: 1463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1271883306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)