Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0228.Seq
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y121 Cluster: Putative uncharacterized protein; n=2; ...    34   2.1  
UniRef50_Q23EA8 Cluster: Putative uncharacterized protein; n=1; ...    32   8.6  

>UniRef50_Q4Y121 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 519

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
 Frame = -1

Query: 331 CRRSIVKVNSNLNISIITMVSLDHFWLTASFMSLLRNCLHGE-HNYIVHKTYMFI**QKI 155
           C  S+ K+N N+NI +++ V   HF + ++++ L +NC   +  NY++  +      + +
Sbjct: 305 CLISLTKINCNINI-LLSKVHYSHFNVNSNYIYLFKNCTSIDLMNYLLCFSRNLYMKKDV 363

Query: 154 R*SKAELF*VH--AYENLVTIIVNIVHALTKTDF-XXXXXKIFQNKLIYNNHRN 2
               AELF  +   Y    T +VNI++A +K  +       I  N LI    RN
Sbjct: 364 YNILAELFINNNKIYILEPTDLVNIIYAYSKIYYIHNKLFTIVDNILISRLDRN 417


>UniRef50_Q23EA8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1967

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
 Frame = +3

Query: 234 LINEAVSQKWSKLTIVIMEILRFEFT---FTILRRQKYAQK*CSQRHQLSM*N*GKAXL- 401
           +++  VSQK S+  IV M IL FE+T    T L    Y  K CS + Q+      +    
Sbjct: 169 ILSSQVSQKSSQYLIVNMAILTFEYTIEYITELNISGYQNKFCSAQLQIKTSQSDQLTKM 228

Query: 402 ----NQNLLCIK*IAIHKHEYELWV 464
                QNLL +K + I    Y L++
Sbjct: 229 QQSDYQNLLSLKQLLIQNIIYSLYI 253


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,555,550
Number of Sequences: 1657284
Number of extensions: 7869917
Number of successful extensions: 14923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14920
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)