Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0228.Seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    27   2.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   6.5  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 225 RKRLINEAVSQK-WSKLTIVIMEILRFEFTFTILRRQKYAQK 347
           RK ++    S+K W+ LTI+ +  L   + FT +R   Y+Q+
Sbjct: 182 RKIIVKIFTSRKVWAALTIITVITLSSGYMFTRIRFSPYSQR 223


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 310 VNSNLNISIITMVSLDHFWLTASFMSLLRNCLHGEHNYIVHKTY 179
           V  N+  S+ITMVS D   L      L +   HG++  ++   Y
Sbjct: 491 VVENVRGSVITMVSSDGLRLDVPSRGLRKRFRHGDYVKVIAGKY 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,154
Number of Sequences: 5004
Number of extensions: 36879
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)