Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0228.Seq
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 28 3.8
SB_28788| Best HMM Match : RVP (HMM E-Value=0.028) 27 6.7
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 27 6.7
SB_18007| Best HMM Match : RVP (HMM E-Value=0.047) 27 6.7
SB_17872| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 27 6.7
SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 27 6.7
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 27 6.7
SB_3685| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 27 6.7
SB_53519| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 27 6.7
SB_46473| Best HMM Match : RVP (HMM E-Value=0.029) 27 6.7
SB_43861| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 27 6.7
SB_29788| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 27 6.7
SB_13078| Best HMM Match : RVP (HMM E-Value=0.039) 27 6.7
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18) 27 6.7
SB_8937| Best HMM Match : RVP (HMM E-Value=0.029) 27 6.7
SB_59190| Best HMM Match : rve (HMM E-Value=6e-18) 27 8.9
>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 649
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV-IYVKLGKSRFEPKFIMY 421
H+Y+G IE+ L N P K K+M V + SR P+ + +
Sbjct: 269 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEVKLKXXXXDSRGSPEVLQF 318
>SB_28788| Best HMM Match : RVP (HMM E-Value=0.028)
Length = 278
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 557
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASVIYVKLGKSRFEP 406
H+Y+G IE+ L N P K K+M I K K +P
Sbjct: 269 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKESITNKPLKRVHQP 312
>SB_18007| Best HMM Match : RVP (HMM E-Value=0.047)
Length = 202
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_17872| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 307
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 269 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 300
>SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 157 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 188
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 184 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 215
>SB_3685| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 357
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 269 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 300
>SB_53519| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 449
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 269 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 300
>SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 304
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_43861| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 353
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 269 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 300
>SB_29788| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 327
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 184 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 215
>SB_13078| Best HMM Match : RVP (HMM E-Value=0.039)
Length = 251
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
Length = 1003
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 303
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIMFTKASV 370
H+Y+G IE+ L N P K K+M V
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVMIAGKEV 59
>SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 660
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 275 HSYYGDIEI*IYLYNTSPAKIRAKIM 352
H+Y+G IE+ L N P K K+M
Sbjct: 28 HTYFGSIEVGSVLQNQQPKKSLIKVM 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,603
Number of Sequences: 59808
Number of extensions: 245916
Number of successful extensions: 431
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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