Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0228.Seq
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.7  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   9.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   9.7  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   9.7  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   9.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 464 YPQFIFVFMYCNLFNT 417
           Y  F+F  ++CN+ NT
Sbjct: 300 YIDFLFQVLHCNMENT 315


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 210 VNIII*FTKHTCLFDNKKFDNQRQSYFEYT 121
           V+++I F+K+  + D  K  N+R +   YT
Sbjct: 503 VSLLINFSKNNTIVDISKLVNKRNNAKIYT 532


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 494 ILXTSAQT*PYPQFIFVFMYCNLF 423
           I+ +S  +   P  I VF+Y N+F
Sbjct: 344 IIYSSLSSFYIPCIIMVFLYYNIF 367


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 235 SLLRNCLHGEHNY 197
           SLL N +H  +NY
Sbjct: 306 SLLNNTIHNNNNY 318


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 235 SLLRNCLHGEHNY 197
           SLL N +H  +NY
Sbjct: 317 SLLNNTIHNNNNY 329


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 235 SLLRNCLHGEHNY 197
           SLL N +H  +NY
Sbjct: 317 SLLNNTIHNNNNY 329


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 235 SLLRNCLHGEHNY 197
           SLL N +H  +NY
Sbjct: 306 SLLNNTIHNNNNY 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,660
Number of Sequences: 438
Number of extensions: 2557
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)