Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0227.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.2  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   7.3  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   7.3  

>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 428 ILNLTQVMHIVTIIYSPFXIIRVVKLEN*EKFRVYA 535
           + + T V+ + T  ++   I+R + +EN ++F +YA
Sbjct: 60  LFSFTSVLTVSTFTFASCLIMRTIGVENIKEFGLYA 95


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 86  LNVENASSIFKSLVYY 39
           LN+EN + +FK+L +Y
Sbjct: 294 LNIENEAKLFKNLTFY 309


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 246 WLTIHEL*SLIYQFNLIIHLTLFY 175
           WL+ H   S+IY  N + +L  FY
Sbjct: 266 WLSCHFYYSIIYLLNSMFYLLTFY 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,613
Number of Sequences: 5004
Number of extensions: 34559
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)