Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0227.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299...    28   5.6  
05_03_0233 - 10704018-10704118,10704217-10705411                       27   7.5  

>01_06_1597 +
           38528241-38528588,38529623-38529721,38529814-38529927,
           38530349-38530420,38530520-38530630,38530738-38530857,
           38531541-38531613,38531997-38532077,38532167-38532231,
           38532383-38532484,38532571-38532744,38532873-38532938
          Length = 474

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 326 FHLSIMITF*LKKHARPSLTIKKKESYHLPCLVAIL-NLTQVMHIVTIIYSPF 481
           FH  +++ F    HAR  +  ++ + Y  PC +  + ++ +   IV+  Y  F
Sbjct: 394 FHAHVLLHFINASHARKQMNSRRSDPYGNPCNMDFMAHIAESCKIVSSSYGTF 446


>05_03_0233 - 10704018-10704118,10704217-10705411
          Length = 431

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/29 (27%), Positives = 22/29 (75%)
 Frame = -3

Query: 492 LIXQNGEYIMVTMCITCVRFNIATKHGRW 406
           ++ ++GEY++  + ++C+R + ++ +GRW
Sbjct: 174 IVARDGEYVVAELMMSCLR-SFSSVNGRW 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,080,737
Number of Sequences: 37544
Number of extensions: 177261
Number of successful extensions: 247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)