Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0227.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    31   0.55 
Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine re...    27   6.7  

>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 389 KKKESYHLPCLVAILNLTQVMHIVTIIYSPFXII 490
           K+K S++L C+   +N   ++ I+TI+Y P  II
Sbjct: 46  KQKTSFNLVCVFRSINNVAIIFILTIVYIPAIII 79


>Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical
           protein D1086.8 protein.
          Length = 185

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 322 HVSFEHHDHILIKEACKTIPHY*KKRILPSTMFGCNIESYTSYAHCDHNI-LTILXYKGS 498
           H SF   DHI I + CKT     K  +  S +   ++++ T    CD+ + LT   Y  S
Sbjct: 61  HESFTASDHIGINQNCKTSLTCLKTNVGCSNISQNDVDTLTK--KCDYMLYLTGGFYACS 118

Query: 499 QA*KLRKV*GICHVSF 546
           Q  K RK   +C  +F
Sbjct: 119 QKLKNRKDNSLCVENF 134


>AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein64 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +1

Query: 13  TIIKTQLSL**TRDLNIELAFSTFNYNQLILNIKKAEIIAINLIL*TSTNKSLR 174
           TI+ T ++L  T   N E  F   NY    LN        +N IL  STNK +R
Sbjct: 226 TILTTYMALLITFWHNAESWFKMTNYTLASLNCVWILFSHLNFILLVSTNKGVR 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,747,153
Number of Sequences: 27780
Number of extensions: 193851
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)