Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0225.Seq
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   3.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 292 TCPPGP*ESPAPDLQSGV 239
           T P GP  +P P L SG+
Sbjct: 70  TAPHGPPYAPHPSLSSGL 87


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 384 WALT*GSWEWSVCLVYF 334
           W++  G W W  C  +F
Sbjct: 403 WSVNAGMWMWLSCSSFF 419


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 114 VCTMST*TRTVTGC 155
           VC  ST TR  TGC
Sbjct: 921 VCAGSTGTRRATGC 934


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 450 FVSKHSRLPFMSSL 409
           ++S+HS +PF+  L
Sbjct: 271 YISRHSPIPFIKKL 284


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 450 FVSKHSRLPFMSSL 409
           ++S+HS +PF+  L
Sbjct: 271 YISRHSPIPFIKKL 284


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 450 FVSKHSRLPFMSSL 409
           ++S+HS +PF+  L
Sbjct: 271 YISRHSPIPFIKKL 284


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 450 FVSKHSRLPFMSSL 409
           ++S+HS +PF+  L
Sbjct: 271 YISRHSPIPFIKKL 284


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 41   RENMTYFHSVNAGVIPPP 94
            R +++  H V  GVIP P
Sbjct: 1070 RHHLSKMHFVKDGVIPDP 1087


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,095
Number of Sequences: 336
Number of extensions: 2701
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)