Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0225.Seq
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.7  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   4.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.2  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    25   6.2  
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    25   8.2  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 268 SPAPDLQSGVLRTEPLRQPQRVEPVDLILDPLGFEDEE 155
           SP+P +Q  V  +  + + + + P+DL LD   + DEE
Sbjct: 578 SPSPSIQLSV--SSSISRDKNLSPLDLELDDPTYSDEE 613


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  ALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLR 214
           ++ +KLRL  V+ +P   R L       I + +Y L P+R
Sbjct: 371 SIFEKLRLIRVEYDPSTGRPLRCTNFTIINFVLYHLGPMR 410


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 50   MTYFHSVNAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWF 229
            +++F    A  IP P   D +  + V +  YG ++LL L  K I  E  +L  + L E+ 
Sbjct: 855  LSFFAQSLATPIPEPIPVDAMPTFTVLVPHYGEKILLSL--KEIIREQDKLSRVTLLEYL 912

Query: 230  R 232
            +
Sbjct: 913  K 913


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 KYEVYRLDPLRLPEWFRAKNPRLKIRCWRFL 274
           K+ +YR +P  LP +   ++P L  R W ++
Sbjct: 8   KFALYRENPCLLPLYHATRDPSLAKREWTWI 38


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 137 PYGHRVLLVLEAKRIKYEVYRLD 205
           PY H    V+  K+IK +VY++D
Sbjct: 26  PYCHATEKVIADKKIKAQVYQID 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,280
Number of Sequences: 5004
Number of extensions: 43041
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)