Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0225.Seq
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 36 0.032
10_08_0709 + 20055748-20056077,20056169-20056534 32 0.30
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 32 0.39
10_08_0723 + 20111974-20112705 30 1.2
01_07_0180 + 41832357-41832680,41833024-41833367,41833789-418339... 29 2.1
11_01_0763 + 6402901-6403971,6404581-6404826 29 3.6
03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968... 29 3.6
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 29 3.6
12_01_0740 + 6646471-6649407 28 4.8
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 28 4.8
11_01_0037 - 280749-281196,281418-281568,281684-281720,281831-28... 28 6.3
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 28 6.3
01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361... 28 6.3
11_03_0058 - 9380926-9381062,9382003-9382413,9382561-9382786 27 8.4
10_08_0720 - 20100406-20100798,20100917-20101249 27 8.4
10_08_0711 + 20073470-20073799,20073882-20074274 27 8.4
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 27 8.4
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 137 PYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKI 256
P+ RVLL +E K + Y++ +D P+WF +P K+
Sbjct: 81 PFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKV 120
>10_08_0709 + 20055748-20056077,20056169-20056534
Length = 231
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 104 DKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNP 244
D+L+L + ++PY HRV L L K + YE D E + NP
Sbjct: 7 DQLKLLGLWVSPYTHRVKLALSFKGLSYEYVEEDLSNKSELLLSTNP 53
>03_02_0445 -
8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 224 TPAASAGRACRPHT*SSWLRGRGAPCDRTGSCRHGTDE--ACPSEPVAESHRRLRS 63
T SAG+ +P S GR A C+ C++ D+ P P+ +H+R+R+
Sbjct: 763 TKGRSAGKTRKPKK-SKLKHGRSADCNDASPCKNDLDDFHDSPDIPLPSNHQRMRN 817
>10_08_0723 + 20111974-20112705
Length = 243
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 104 DKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNP 244
D+L+L V +PY +RV +VL K + YE D + + NP
Sbjct: 9 DELKLLGVWDSPYVNRVQIVLNLKGLSYEYVEEDLMNKSDLLLGSNP 55
>01_07_0180 +
41832357-41832680,41833024-41833367,41833789-41833945,
41834119-41834430,41834537-41834908
Length = 502
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 283 GDRFLFESVVICDYLDEEVH 342
GDR L ES+VI +Y+DE H
Sbjct: 335 GDRSLSESLVILEYIDESFH 354
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 152 PCDRTGSCRHGTDEACPSEPVAESHR 75
P R C G D A PS VA+SHR
Sbjct: 396 PTARPTRCESGVDLAAPSTAVAKSHR 421
>03_02_0591 -
9682476-9682487,9682805-9682885,9683085-9683192,
9683307-9683383,9683495-9683603,9683696-9683794,
9684208-9684294,9684454-9684514,9684646-9684720,
9684826-9684854
Length = 245
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +2
Query: 65 SVNAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRI--KYEVYRLDPLRLPEWFRAK 238
S+ + PPP RLY PY R + K + K ++ +D P W++ K
Sbjct: 19 SLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEK 78
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 97 SDG--QASSVPCRHEPVRSQGAPRPRSQEDQV*GLQARPAEAAGVVPCEEPQIED 255
SDG Q S+ CR + S+ S E+Q L A + G +PC + ED
Sbjct: 270 SDGENQRDSLKCRSDTQNSESNKGMASDENQKKALLLWKANSNGSIPCPRKEKED 324
>12_01_0740 + 6646471-6649407
Length = 978
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/91 (25%), Positives = 46/91 (50%)
Frame = -2
Query: 510 SNSFSKISSVWMICSLPKAKFVSKHSRLPFMSSLNLSISNRSWALT*GSWEWSVCLVYFF 331
S SF +++S CS+ + +H LP+++SL+LS + A+ W W + FF
Sbjct: 473 SISFLRLAS----CSISSFPNILRH--LPYITSLDLSYNQIQGAIP--QWTWETWTMNFF 524
Query: 330 IQVIADHDAFEEEPVPLVRRNLQHRIFNLGF 238
+ ++ ++ PL+ +++ F+L F
Sbjct: 525 LLNLSHNNFTSIGSNPLLPLYIEY--FDLSF 553
>07_01_0247 +
1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 121 PCRHEPVRSQGAPRPRSQEDQV*GLQARPAEAAGVVPCEEPQIEDPVLEIPTDQGDRFLF 300
P +P+ +Q + P + Q+ PAE P E+PQ D + PT D FL
Sbjct: 382 PLVQQPLTNQSSAVPLLTQWQMRFGDQPPAEVQACTPVEQPQ-NDNAVHTPT-FSDSFLL 439
Query: 301 ESVVICDYLDEEVHEA 348
E ++ D D+ + A
Sbjct: 440 E--LLADVSDDGIATA 453
>11_01_0037 -
280749-281196,281418-281568,281684-281720,281831-281907,
282130-282382
Length = 321
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 567 DHVVQHSRPVTAEVICTXVSN 505
D+++ H RPV E+IC+ SN
Sbjct: 242 DNIMNHQRPVLKEMICSEGSN 262
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = +1
Query: 79 CDSATGSDGQASSVPCRHEPVRSQGAPRPRSQEDQV*GLQARPAEAAGVVPCEEPQIE 252
CD G D AS + G P+S ED A PAEAA + +E
Sbjct: 300 CDVDGGCDDDASVIAESTVTTTVNGEGNPKSPEDDDGFTSASPAEAASTSGFDRTSVE 357
>01_05_0281 -
20334578-20334961,20335859-20336005,20336088-20336141,
20336391-20336555,20337331-20337855
Length = 424
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 469 ADHPDAGDLREGIANXGTNYFGGNRPG 549
ADHPD D++ G+ NYF PG
Sbjct: 392 ADHPDCYDIQGGVNAVWGNYFYYGGPG 418
>11_03_0058 - 9380926-9381062,9382003-9382413,9382561-9382786
Length = 257
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Frame = +1
Query: 199 ARPAEAAGVVPCEEPQIEDPVLEIPT-------DQGDRFLFESVV 312
ARPA+AA + P E+P D ++ DQGD +L E +
Sbjct: 154 ARPAKAATLAPSEDPSDADDAEDVEVESEAEADDQGDDYLGEDAM 198
>10_08_0720 - 20100406-20100798,20100917-20101249
Length = 241
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 104 DKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNP 244
D +++ + M+P+ RV + L+ K + YE D E + NP
Sbjct: 6 DDVKVLGLVMSPFAIRVCIALKLKGVSYEYIEEDLANKSELLLSSNP 52
>10_08_0711 + 20073470-20073799,20073882-20074274
Length = 240
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 104 DKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNP 244
D+L+L + +PY R L L+ K + YE D + F NP
Sbjct: 7 DELKLLGMWASPYVSRAKLALQLKGVSYEYIEEDLGNKSDLFLRSNP 53
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 94 GSDGQASSVPCRHEPVRSQGAPRPRSQEDQV*GLQARPAEAAGVV 228
G G C +++ PRP S + L +PA AAG V
Sbjct: 131 GGGGGGGRRACEAFSFKNRAPPRPSSSQASSPSLSPQPAHAAGAV 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,336
Number of Sequences: 37544
Number of extensions: 320878
Number of successful extensions: 1037
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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