Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0225.Seq
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14) 55 5e-08
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 1.2
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_23392| Best HMM Match : Vicilin_N (HMM E-Value=3.2) 28 4.9
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_7482| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 27 8.6
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 27 8.6
>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
Length = 238
Score = 54.8 bits (126), Expect = 5e-08
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 7/179 (3%)
Frame = +2
Query: 50 MTYFHSVNAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWF 229
M H N PPP DKLRLY + PY R LVL AK + YE ++ P+W+
Sbjct: 1 MPQSHLSNGDPRPPPG--DKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDWY 58
Query: 230 RAK-NPRLKIRCWRFLRTRGTGXXXXXXXXXITWMKK-YTRHTLHSHDPYVKAQDRLLIE 403
A+ NPR + + G ++ + + ++ ++ D + K + RLLI+
Sbjct: 59 LAEPNPRGLVP----MIEMPDGRLLPESLLCCEYLDELFPQNPMYPSDAFEKNRQRLLID 114
Query: 404 RFNELIKGSLEC----FDTNFAFG-SEQIIQTLEIFEKELLTXVQITSAVTGLECWTTW 565
RF ++ + D + G +E + + L ++E EL G+ + W
Sbjct: 115 RFGKVTSSFYQMLMRDMDEDALKGQTETLNKELSLYENELKNKTFFAGEKPGMADFMLW 173
Score = 33.9 bits (74), Expect = 0.099
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 526 YFGGNRPGMLDYMVWPWVEK 585
+F G +PGM D+M+WP+ E+
Sbjct: 159 FFAGEKPGMADFMLWPFFER 178
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 48.4 bits (110), Expect = 4e-06
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +2
Query: 68 VNAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPR 247
++ G P +KLRLY + P+ R LVL AK + YE ++ PEWF+ +P
Sbjct: 16 ISKGSSRPAKPQNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKPEWFQT-HPD 74
Query: 248 LKIRCWRFLRTRGTGXXXXXXXXXITWMKKYTRH-TLHSHDPYVKAQDRLLIERFNE 415
+ + L T G +++ Y R L+ DPY K++ +LL +RF++
Sbjct: 75 CEGKV-PTLETM-DGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQRFDK 129
>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 757
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 160 RPRSQEDQ-V*GLQARPAEAAGVVPCEEPQIEDPVLEIPTDQGDRFLFE 303
RPR++E++ V + R E G V CEE + + E+ ++ D +FE
Sbjct: 67 RPRNEEEERVVDVTKRDTEDLGTVKCEEQEEVQIMNEVGEEEDDDVIFE 115
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 398 IERFNELIKGSLECFDTNFAFGSEQIIQTLEIFEK--ELLTXVQITSAVT 541
+ER N+ +KG +EC D + ++I Q E EK + L + T AV+
Sbjct: 613 LERENKKLKGEIECNDEMIQYQEKRINQYAEEIEKLEDKLMYLPTTPAVS 662
>SB_23392| Best HMM Match : Vicilin_N (HMM E-Value=3.2)
Length = 190
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 143 RTGSCRHGTDEACPSEPVAESHR 75
R +CRH TDE C E V S++
Sbjct: 74 RYQTCRHSTDETCAKEQVEYSYQ 96
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 91 WRNHTGVYGVKISHVFT 41
W+ +G YG ++SHVFT
Sbjct: 3494 WQPSSGSYGARVSHVFT 3510
>SB_7482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 38 LRENMTYFHSVNAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIK 184
+R MT+ H++N G++ P + M Y H + L AK++K
Sbjct: 38 IRLEMTFNHAINYGMVIPSGSPRTEQCVRSFMKNYHHEIFDDLIAKQLK 86
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 127 RHEPVRSQGAPRPRSQEDQV*GLQARPAEAAGVVPCEEPQIEDPV 261
RHEPV GA P + + GL+ PA A G V +P + P+
Sbjct: 1334 RHEPVGVVGAITPWNFPLLMEGLKLAPALACGCVVILKPAEQTPL 1378
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 46 KHDLFSLRKRRCDSATGSDGQASSVPCRHEPVRSQGAPRPRSQEDQV*GLQARPAEAAG 222
KH+ FS + RR SA + + R+EP PRP S + + Q RP+ G
Sbjct: 320 KHETFSSKIRRVQSAGTKRSKENPTGARNEP-----KPRPASSKGTM-NTQKRPSSYKG 372
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,855
Number of Sequences: 59808
Number of extensions: 347058
Number of successful extensions: 1059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -