Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0225.Seq
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -1

Query: 253 LQSGVLRT--EPLRQPQRVEPVDLILDPLGFED---EEHPVTVRVHVDMVQTKLVRQSRW 89
           LQSG L      +   +  E   +++D  G       E+P  V   +  V  K +   +W
Sbjct: 277 LQSGTLNAPWSYMSGEKANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQW 336

Query: 88  RNHTGVYG 65
            ++ G+ G
Sbjct: 337 NSYWGILG 344


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -1

Query: 253 LQSGVLRT--EPLRQPQRVEPVDLILDPLGFED---EEHPVTVRVHVDMVQTKLVRQSRW 89
           LQSG L      +   +  E   +++D  G       E+P  V   +  V  K +   +W
Sbjct: 277 LQSGTLNAPWSYMSGEKANEVATILVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQW 336

Query: 88  RNHTGVYG 65
            ++ G+ G
Sbjct: 337 NSYWGILG 344


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 384 WALT*GSWEWSVCLVYF 334
           W++  G W W  C  +F
Sbjct: 407 WSVNAGMWMWLSCSSFF 423


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 80  VIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNP 244
           ++ P   TDK+ L  VDM  Y + +  +     +  +V    P  LPE++   NP
Sbjct: 631 LVRPNTFTDKVNLTRVDM--YANMIETMELTSLLLTKVAEDRP--LPEFYIGGNP 681


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,073
Number of Sequences: 438
Number of extensions: 3293
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)