Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0225.Seq
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36270.1 68418.m04375 dehydroascorbate reductase, putative si...    42   2e-04
At5g16710.1 68418.m01956 dehydroascorbate reductase, putative St...    36   0.026
At1g75270.1 68414.m08744 dehydroascorbate reductase, putative si...    35   0.035
At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90) ...    29   1.7  
At5g23750.1 68418.m02786 remorin family protein contains Pfam do...    27   7.0  
At2g20610.2 68415.m02412 aminotransferase, putative similar to n...    27   9.3  
At2g20610.1 68415.m02411 aminotransferase, putative similar to n...    27   9.3  

>At5g36270.1 68418.m04375 dehydroascorbate reductase, putative
           similar to dehydroascorbate reductase {Spinacia
           oleracea} gi:10952511 gb:AF195783, PMID:11148269
          Length = 217

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +2

Query: 137 PYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKIRCWRF 271
           P+G R+LL LE K++ Y+ + +D    P+WF A +P+ K+   +F
Sbjct: 21  PFGQRILLTLEDKKLPYKTHLIDVSLKPDWFLAISPKGKLPLVKF 65


>At5g16710.1 68418.m01956 dehydroascorbate reductase, putative
           Strong similarity to dehydroascorbate reductase
           [Spinacia oleracea] gi:10952512 gb:AAG24945
          Length = 258

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 137 PYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKIRCWRF 271
           P+  +VLL +E K + Y++  +D    PEWF   +P  K+   +F
Sbjct: 67  PFCQKVLLTMEEKNVPYDMKMVDLSNKPEWFLKISPEGKVPVVKF 111


>At1g75270.1 68414.m08744 dehydroascorbate reductase, putative
           similar to GI:6939839 from [Oryza sativa]
          Length = 213

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 137 PYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKI 256
           P+  RVLL LE K++ Y+ + ++    P+WF   +P  K+
Sbjct: 21  PFSQRVLLTLEEKKLPYKTHLINVSDKPQWFLDISPEGKV 60


>At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90)
           (CPD) identical to Cytochrome P450 90A1 (SP:Q42569)
           [Arabidopsis thaliana]
          Length = 472

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 71  NAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEV 193
           N+ +I    + D  RL   +++ +  RVLL+ EAK+I +E+
Sbjct: 137 NSSIIKDHLMLDIDRLVRFNLDSWSSRVLLMEEAKKITFEL 177


>At5g23750.1 68418.m02786 remorin family protein contains Pfam
           domain, PF03766: Remorin, N-terminal region; contains
           Pfam domain, PF03763: Remorin, C-terminal region
          Length = 202

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 202 RPAEAAGVVPCEEPQIEDPVLEIPTDQGDRFLFESVVICDYLDEEVHE 345
           +PA AA V P E+P    PVL  P    ++   +S  I   + +EV E
Sbjct: 26  KPAAAADVAPQEKPVAPPPVLPSPAPAEEK-QEDSKAIVPVVPKEVEE 72


>At2g20610.2 68415.m02412 aminotransferase, putative similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 436

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 252 RSGAGDSYGPG-GQVPLRK 305
           RSG G+SYGPG G +P R+
Sbjct: 97  RSGKGNSYGPGAGILPARR 115


>At2g20610.1 68415.m02411 aminotransferase, putative similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 462

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 252 RSGAGDSYGPG-GQVPLRK 305
           RSG G+SYGPG G +P R+
Sbjct: 97  RSGKGNSYGPGAGILPARR 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,687
Number of Sequences: 28952
Number of extensions: 237262
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)