Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0224.Seq
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   5.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.6  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 115
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 115
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 115
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 115
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 115
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 411 TSXXGSRRANYPLPARGGSDKKYD 482
           T     + A+YP P     D+KYD
Sbjct: 242 TPKRNPKEADYPAPLYELIDRKYD 265


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 304 HLKDASPVLDHAICKSYQIH 245
           +L D+SP L+ A C+ +  H
Sbjct: 63  NLCDSSPCLNGATCQDHTTH 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,399
Number of Sequences: 336
Number of extensions: 2698
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)