Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0224.Seq
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           29   3.4  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    27   8.0  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   8.0  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 496 RKSPVSYFLSLPPRAGSG*FARLLPXLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 332
           R +P S   S  P    G   RL     +VA+ + P P S+P  D P   TT+ + E
Sbjct: 91  RAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 442 THXRHGEVVTKNTIXDSYEAS*WNEXTLNILTRNKLEGKSG 564
           T  +   V   +T  ++ E S +    L ++ RNK  GKSG
Sbjct: 339 TSIQKPSVARNSTSLENMETSVYGPELLKVILRNKFRGKSG 379


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 424 PXLDVVAVSQAPSPESNPDSPLP 356
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,750
Number of Sequences: 37544
Number of extensions: 332273
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)