Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0224.Seq
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.010
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.041
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.38 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.38 
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -2

Query: 415 DVVAVSQAPSPESNPDSPLPVTTM 344
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -2

Query: 406 AVSQAPSPESNPDSPLPVTTM 344
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = +1

Query: 1   VVICLSQRLSHACLSASRIKAIPRMA 78
           VVICLSQRLSHACLS S      RMA
Sbjct: 136 VVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = +1

Query: 1   VVICLSQRLSHACLSASRIKAIPRMA 78
           VVICLSQRLSHACLS S      RMA
Sbjct: 112 VVICLSQRLSHACLSISTRTVKLRMA 137


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 405 PFLRLPLRNRTLIPRYP 355
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 5   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 139
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 5    LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 139
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = -2

Query: 550 PICSSLKYLKXTHSITRPRKSPVSYFLSLPPRAGSG*FARLLPXLDVVAVSQAPSPESNP 371
           P  S+ + L+  H      KSP +   S  P+ G G    + P LD+V     P P++  
Sbjct: 360 PAASASQLLRNHHKEVNNSKSPAT--TSSEPKLGRG----IYPGLDIVFDVPTPPPKTTS 413

Query: 370 DSPLPVTTMVVAETTIE 320
            + L   ++V  +  IE
Sbjct: 414 SAKLRALSVVKQKGPIE 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,763
Number of Sequences: 59808
Number of extensions: 359896
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)