Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0224.Seq
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    31   0.44 
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    27   9.5  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 529 YLKXTHSITRPRKSPVSYFLSLPPRAGSG*FARLLPXLDVVAV 401
           +LK +  + R   SP +YF  L  R GSG  + ++  L VVAV
Sbjct: 24  WLKSSRPLARGALSPAAYFRDLENRHGSGASSPIVGGLSVVAV 66


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 63  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 167
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 SYSVTWITVVILELIHAIRTLTSDGMS 185
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 427 LPXLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 323
           +P   V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,842,290
Number of Sequences: 27780
Number of extensions: 257976
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)