Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0224.Seq
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.95 
At4g38560.1 68417.m05459 expressed protein                             28   5.0  
At4g17410.1 68417.m02607 expressed protein                             27   8.8  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    27   8.8  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   8.8  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 251 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 156
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 3   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 146
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 196 DQNQSTEGLASEVVN-FDESGNFCRSHGQVPATHLSNVC 309
           D N      AS V + FDE GN   S    PA H +N+C
Sbjct: 19  DMNNVITADASPVEDEFDEFGNDLYSIPDAPAVHSNNLC 57


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 406 AVSQAPSPESNPDSPLPVTTMVVAETTIES 317
           A + APSP +NP    P T   V++   ES
Sbjct: 45  ATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   VVICLSQRLSHACLSASRIKAIPRMAQY 84
           ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 18  IISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,714
Number of Sequences: 28952
Number of extensions: 251061
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)