Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0223.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   132   2e-32
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   132   2e-32
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.17 
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2...    27   1.2  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          27   2.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   3.6  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   4.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   4.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   8.4  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.4  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   8.4  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  132 bits (320), Expect = 2e-32
 Identities = 59/79 (74%), Positives = 69/79 (87%)
 Frame = +1

Query: 1   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
           GKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 181 PNSAIRKCVRVQLIKNGKK 237
           PNSAIRKCVRVQLIKNGKK
Sbjct: 62  PNSAIRKCVRVQLIKNGKK 80



 Score = 85.0 bits (201), Expect = 6e-18
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLRSLQREKGRPRS 425
           P DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L      +K +PR+
Sbjct: 86  PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  132 bits (320), Expect = 2e-32
 Identities = 59/79 (74%), Positives = 69/79 (87%)
 Frame = +1

Query: 1   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
           GKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 181 PNSAIRKCVRVQLIKNGKK 237
           PNSAIRKCVRVQLIKNGKK
Sbjct: 62  PNSAIRKCVRVQLIKNGKK 80



 Score = 85.0 bits (201), Expect = 6e-18
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLRSLQREKGRPRS 425
           P DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L      +K +PR+
Sbjct: 86  PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 124 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
           L22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 312 GRKGHAVGDIPGVRFKVVKVANVSLLRSLQREKGR 416
           GR G A+   P VR  VV     +LLR LQR + R
Sbjct: 191 GRGGRAIERSPRVRVTVVLRDERALLRDLQRRQQR 225


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -2

Query: 342 ECHRRRDLYDRIPP-LVLRRFLRCGLGNRHGDECGHFLSVLNELYTDAFADGRVGLLSFY 166
           EC  +  +Y  IPP L + R+    +   H D  GH L +  E   +A +    G  SF+
Sbjct: 155 ECSLQGFMY--IPPTLFIDRYELSNIAEMHADNLGHVLGIWGETDLEAPSYKLNGTGSFF 212

Query: 165 -TNFLEDDAL 139
             +   DD L
Sbjct: 213 WFDIYTDDGL 222


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 364 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 254
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 61  WADKEFKKAHMGTKWKANPFGGASHAKGIV 150
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 67  PPIAVHDGGSRAYAP 23
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 343 GMSPTA*PLRPNPATSTSSFSSMWFRQPSRGRMRSLS 233
           G +P   P RP+  +  S  SS   R+PS  R+RS S
Sbjct: 273 GNAPQQTPARPSLRSVPSYPSSNNQRRPSASRVRSFS 309


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 120 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYS 13
           E + LP R  +  L FF +PSL + + +++  ++ S
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNAS 235


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVG 335
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,842
Number of Sequences: 5004
Number of extensions: 40767
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)