Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0223.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              144   5e-35
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              102   1e-22
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      29   2.1  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   3.7  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   6.5  
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         27   6.5  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               27   6.5  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   6.5  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        27   6.5  
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      27   8.6  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   27   8.6  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  144 bits (348), Expect = 5e-35
 Identities = 66/78 (84%), Positives = 72/78 (92%)
 Frame = +1

Query: 4   KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 183
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 184 NSAIRKCVRVQLIKNGKK 237
           NSAIRKCVRVQLIKNGKK
Sbjct: 62  NSAIRKCVRVQLIKNGKK 79



 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLRSL 398
           P DGCLN+IEENDEVL++GFGR+GHAVGDIPG+  +     NV     L
Sbjct: 85  PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGISNRSPPKQNVKFQEKL 133


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  102 bits (245), Expect = 1e-22
 Identities = 46/58 (79%), Positives = 52/58 (89%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLRSLQREKGRPRS 425
           P DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLL   + +K RPRS
Sbjct: 86  PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +1

Query: 154 EKVGVEAKQPNSAIRKCVRVQLIKNGKK 237
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 84  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 182
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
 Frame = -3

Query: 221 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 57
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 56  CSRRWFTCLRAVRIPRGL 3
           C   W T L+   +P GL
Sbjct: 117 CPANWTTQLQRDALPTGL 134


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 152  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 57
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 44  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 136
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 139 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 234
           KG+ ++    + K+PNSA RKC  ++L  NGK
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGK 260


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 252 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 148
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 76  ILCPPIAVHDGGSRAYAPFV 17
           ++ PP  + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 252 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 148
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 163 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 261 GCLNHIEENDEVLVAGFGRKGHA 329
           G  N +EEN  +LV G GRKG++
Sbjct: 39  GNANLLEENRLILVTGDGRKGYS 61


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 261  GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLRSLQREKG 413
            G   H+EE  E    G G +  +  D  G  FK   +AN+  L  LQR  G
Sbjct: 1061 GRFPHLEEPYEWDREGTGSEFESGSDTGGFSFKPNMIANMRHLLDLQRRLG 1111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,683
Number of Sequences: 59808
Number of extensions: 357202
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)