Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0223.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   147   3e-36
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.022
AF016430-6|AAK95869.1|  274|Caenorhabditis elegans Hypothetical ...    30   0.81 
AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical...    30   1.1  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   4.3  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  147 bits (357), Expect = 3e-36
 Identities = 65/79 (82%), Positives = 73/79 (92%)
 Frame = +1

Query: 1   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
           GKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2   GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQ 61

Query: 181 PNSAIRKCVRVQLIKNGKK 237
           PNSAIRKCVRVQLIKNGKK
Sbjct: 62  PNSAIRKCVRVQLIKNGKK 80



 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = +3

Query: 252 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLRSLQREKGRPRS 425
           P DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+   + +K RPRS
Sbjct: 86  PNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 124 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 219
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>AF016430-6|AAK95869.1|  274|Caenorhabditis elegans Hypothetical
           protein C05C8.9a protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 340 MSPTA*PLRPNPATSTSSFSSMWFRQPSRGRMRSLSFR 227
           + P   P + +P T    + S W R P+ G MR LS R
Sbjct: 200 LEPGRAPKKYDPVTRYHFYKSEWDRHPAPGEMRRLSLR 237


>AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical
           protein Y73B3A.5 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -1

Query: 454 SRSLIXMYTYDLGRPFSLCRERRRDTLATFTTLKRT-PGMSPTA*PLRPNP--ATSTSSF 284
           S S+    T     P    R+ R+ +L++ TT   T P   PT   ++PNP   T+TS+F
Sbjct: 138 SSSVASSATPSTSSPVDESRQCRKRSLSSSTTPSTTAPPQPPTKKGMKPNPLNLTATSNF 197

Query: 283 S 281
           S
Sbjct: 198 S 198


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 69  VRPSLFTTVVHVLTRRSYSSG 7
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 361 TLKRTPGMSPTA*PLRPNPATSTSS 287
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 361 TLKRTPGMSPTA*PLRPNPATSTSS 287
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 264 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 371
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 225 ERKESDRIRPRDGCLNHIEENDEVLVAG 308
           E K S+ I  RDGC   I+++  V VAG
Sbjct: 435 ETKSSEMIIKRDGCFEVIDDHLMVSVAG 462


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
 Frame = +1

Query: 4   KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFG--------GASHAKGIVLEK 159
           K   +  + KH  H  +  + D  FKK   GT+W    +G        G  + +G +   
Sbjct: 238 KTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKIFFT 295

Query: 160 VGVEAKQPNSAIRK 201
           V +E  QP    RK
Sbjct: 296 VKIENFQPARGNRK 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,913
Number of Sequences: 27780
Number of extensions: 245663
Number of successful extensions: 571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)