Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0223.Seq
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 0.77
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 0.77
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 1.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.8
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 2.3
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 23 2.3
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 2.3
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 2.3
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 2.3
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 2.3
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 23 2.3
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 2.3
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 2.3
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 2.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 2.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 2.3
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 2.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 2.3
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 3.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 3.1
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 3.1
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 3.1
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 3.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 3.1
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 22 4.1
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 4.1
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 22 4.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 4.1
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 7.1
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 7.1
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 7.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 7.1
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 7.1
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 24.2 bits (50), Expect = 0.77
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 321 GHAVGDIPGVRFKVVKVANVSLL 389
GH V D+PGVR +V++ + LL
Sbjct: 69 GHPVNDVPGVR-RVLRNGTLVLL 90
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 24.2 bits (50), Expect = 0.77
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 321 GHAVGDIPGVRFKVVKVANVSLL 389
GH V D+PGVR +V++ + LL
Sbjct: 69 GHPVNDVPGVR-RVLRNGTLVLL 90
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.4 bits (48), Expect = 1.3
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 19 RTARKHVNHRRE----QRWADKEFKKAH--MGTKWKANPFGGASHAKGIVLEKVGVEAKQ 180
RT + + +RRE Q+ ++E++K M +++ +H K +VLE+ ++K
Sbjct: 30 RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKS 89
Query: 181 PNSAIR 198
P S R
Sbjct: 90 PESRDR 95
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N I+E+D VLV + G+
Sbjct: 191 INKIKEHDTVLVVNIEKSGN 210
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.0 bits (47), Expect = 1.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 321 GHAVGDIPGVR 353
G AVGD+PG+R
Sbjct: 42 GSAVGDVPGLR 52
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 175 INKIEEHDTVLVVNIKKSGN 194
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 175 INKIEEHDTVLVVNIKKSGN 194
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 175 INKIEEHDTVLVVNIKKSGN 194
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIEKSGN 205
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N IEE+D VLV + G+
Sbjct: 186 INKIEEHDTVLVVNIKKSGN 205
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 3.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 122 PKGLAFHFVPMWAFLNSLSA 63
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 3.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 122 PKGLAFHFVPMWAFLNSLSA 63
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKG 323
+N IEE+D VLV + G
Sbjct: 175 INKIEEHDTVLVVNIEKSG 193
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKG 323
+N IEE+D VLV + G
Sbjct: 186 INKIEEHDTVLVVNIEKSG 204
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKG 323
+N IEE+D VLV + G
Sbjct: 175 INKIEEHDTVLVVNIEKSG 193
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 3.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 122 PKGLAFHFVPMWAFLNSLSA 63
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 294 LRRFLRCGLGNRHGDECGHFLSVLNEL 214
LRR L+C LG D G L L L
Sbjct: 48 LRRQLKCALGEAPCDPVGRRLKSLAPL 74
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 4.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKG 323
+N IEE D VLV + G
Sbjct: 186 INKIEEQDTVLVVNIEKSG 204
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 294 LRRFLRCGLGNRHGDECGHFLSVLNEL 214
LRR L+C LG D G L L L
Sbjct: 48 LRRQLKCALGEAPCDPVGRRLKSLAPL 74
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 4.1
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 181 PNSAIRKCV 207
PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.0 bits (42), Expect = 7.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 267 LNHIEENDEVLVAGFGRKGH 326
+N I+E+D VLV + G+
Sbjct: 186 INKIKEHDTVLVVNIEKSGN 205
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,923
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 35
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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