Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0222.Seq
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                         31   0.91 
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 255 EIDFCFSNSFHALNTHKNMYVLGESLFLSYLIIVLSFIYSELF 127
           EID  F N F  LN  KN++    +  + + I+VLS+I S +F
Sbjct: 350 EIDETFEN-FVKLNDSKNIFNAARTPAVFFTIVVLSYILSSVF 391


>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 309 CFSFLLNSTVMCFAHFQAEIDFCFSNSFHALNTHKNMYVLGESLFLSYLIIVLSFIYSEL 130
           C+S+L  S  +C+++    +  C+S    +L    +    G  ++ SYL   +   YS L
Sbjct: 22  CYSYLSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRGMIVYYSYLSPSMIVCYSIL 81


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 287  LFNKKEKHVLTPTLAF*DIHNQTNSPPNKFKIALMQKCP 403
            LFN+ E    +P LA  DI N    PP+K   AL Q CP
Sbjct: 3509 LFNR-EDITTSPLLA--DIKNTKFVPPHKVSEALSQLCP 3544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,637
Number of Sequences: 59808
Number of extensions: 278599
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)