Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0221.Seq
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.8  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   4.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.9  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/56 (19%), Positives = 24/56 (42%)
 Frame = +1

Query: 304 QHKWRSFFSSAVNRKSDAASSEDGFWWWNRRKSGSGHKSATVQSFTTR*DEHRQCQ 471
           +H+WR  F+    R +   +  + +W    ++   G  +    +FT   D ++  Q
Sbjct: 379 EHRWRQIFNMVGFRNAVQGTGIENWWSDGNQQIAFGRGNKGFVAFTIGYDLNQHLQ 434


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/56 (19%), Positives = 24/56 (42%)
 Frame = +1

Query: 304 QHKWRSFFSSAVNRKSDAASSEDGFWWWNRRKSGSGHKSATVQSFTTR*DEHRQCQ 471
           +H+WR  F+    R +   +  + +W    ++   G  +    +FT   D ++  Q
Sbjct: 380 EHRWRQIFNMVGFRNAVQGTGIENWWSDGNQQIAFGRGNKGFVAFTIGYDLNQHLQ 435


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 278 HHGYWNY 258
           HHG WNY
Sbjct: 72  HHGQWNY 78


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/46 (19%), Positives = 20/46 (43%)
 Frame = +1

Query: 304 QHKWRSFFSSAVNRKSDAASSEDGFWWWNRRKSGSGHKSATVQSFT 441
           +H+WR  F+    R +   +  + +W    ++   G  +    +FT
Sbjct: 380 EHRWRQIFNMVGFRNAVQETGIENWWSDGNQQIAFGRGNKGFVAFT 425


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 359 RHLKTVSGGGIEGNQDPVTKALPYSHS 439
           +H+KT +G G +G+ D  + +   S S
Sbjct: 392 KHVKTHNGNGKKGSSDSCSDSEENSQS 418


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,142
Number of Sequences: 336
Number of extensions: 2011
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)