Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0221.Seq
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    28   0.72 
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   1.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   2.9  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.1  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   5.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.7  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.9  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    25   8.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.9  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 280 KRNIHRRFQHKWRSFFSSAVNRKSDAASSEDGF 378
           +RNIHR+F+     FFS ++ R   A S+ D F
Sbjct: 832 RRNIHRQFRKPLVIFFSKSLLRHPAARSTIDEF 864


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 184 LAVPVTLMQAPQKNPPRPLVAALK 255
           L  PV L Q P + PP P + ALK
Sbjct: 166 LGQPVLLTQRPCETPPTPSIEALK 189


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 198 YWNCQWPIHFHHDCLSYIHKCCYR 127
           Y NC WP+ +  D +   ++C YR
Sbjct: 188 YINCWWPVFYEKDFMDE-YECLYR 210


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 90  QCYWNCPWMIHFHHDCWNCIHKC 22
           +C+ + P + H HH  W+ I  C
Sbjct: 59  RCFLHNPKISHQHHSFWSLIEGC 81


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 106 LQDPVHPAVAALMDIAQAIVMEV 174
           L D VHPA   L+DIA+A   EV
Sbjct: 72  LLDIVHPAAKTLVDIARAQDAEV 94


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 296  RWMLRFHHGYWNYIFSAATSGRGGFFCGAC 207
            R ML  H G+W+ +     + +  F CGAC
Sbjct: 2609 RHMLE-HQGFWHPLHKEWVTIKNIFVCGAC 2637


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 263 NYIFSAATSGRGGFFCGACISVTG 192
           NY+F  ++  R  FF G C +  G
Sbjct: 153 NYLFFISSQTRDAFFSGICSTFAG 176


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 109 QDPVHPAVAALMDIAQAIVMEVYW 180
           Q+P++P +A    + + +V+ +YW
Sbjct: 519 QNPLYPVMAEFCTVLKNLVLGLYW 542


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 55  EVYHPRAVPVTLMQAQ-TLQDPVHPAVAALMDI 150
           +  H R  P T + A  TL   +HP  AALM++
Sbjct: 170 DTIHKRIFPPTNLVANITLPSTLHPHGAALMEV 202


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 181  PLAVPVTLMQAPQKNPPRPLVAA 249
            P+A PV+  Q  Q  PP P + A
Sbjct: 1011 PMANPVSTAQQTQNRPPAPAMQA 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,888
Number of Sequences: 5004
Number of extensions: 28718
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)