Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0221.Seq
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 30 0.96
04_04_1437 + 33600282-33601562 29 1.7
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 29 2.2
07_03_1199 + 24752111-24752332 29 2.9
11_06_0463 + 23879587-23879771,23879783-23881658 28 5.1
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 28 5.1
03_06_0309 - 33039006-33039184,33039753-33039912 27 6.8
02_03_0385 + 18396109-18396294,18396344-18396379 27 6.8
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 27 6.8
12_02_0058 + 13015401-13016654 27 8.9
09_06_0261 - 21919017-21920594 27 8.9
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 27 8.9
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 8.9
07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911... 27 8.9
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 27 8.9
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 30.3 bits (65), Expect = 0.96
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = -2
Query: 396 PSIPPPETVFR*RGVAFAVDG*AEEAP------PLVLEPSVDVTLPSWLL 265
P PPPE R R A G AEE+P PLV EP +P W L
Sbjct: 102 PPPPPPERPRR-RAAAGGGAGGAEESPQCRVVTPLVSEPEAPAEMPRWRL 150
>04_04_1437 + 33600282-33601562
Length = 426
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 160 IVMEVYWPLAVPVTLMQAPQKNPPRP 237
+V E WPLA P Q P PP+P
Sbjct: 1 MVREEAWPLAAPQQQQQQPSAPPPQP 26
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 29.1 bits (62), Expect = 2.2
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 13 AVAALMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVHPAVA----ALMDIAQAIVMEVYW 180
A+ A+M V V M Y P +L T DP AVA AL+ I QA++ V W
Sbjct: 414 ALMAVMVAVGMVSMRGYRP-----SLAAGLTGPDPTLKAVALVVFALIGIPQAVLFSVPW 468
Query: 181 PLAVPVT 201
+A VT
Sbjct: 469 AVASEVT 475
>07_03_1199 + 24752111-24752332
Length = 73
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 130 VAALMDIAQAIVMEVYWPLAVPVTLMQAP 216
V A+ +A + + WP PV +M+AP
Sbjct: 8 VGAIASVAVGAAVSLLWPAVAPVVMMKAP 36
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 257 IFSAATSGRGGFFCGACISVTGTASGQY 174
+F A GRGG G C+ V +G++
Sbjct: 179 VFKAELCGRGGAAAGRCVDVDDMGAGEF 206
>07_01_1021 +
8736032-8736106,8736336-8736374,8737362-8737493,
8737848-8737892,8738450-8739157,8740679-8740807,
8741290-8741346,8742937-8742954
Length = 400
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 328 SSAVNRKSDAASSEDGFWW-WNRRKSGS 408
S AV R+ A DGFWW W +G+
Sbjct: 153 SRAVGRRGAAVRCGDGFWWRWRGGTAGA 180
>03_06_0309 - 33039006-33039184,33039753-33039912
Length = 112
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 285 TLPSWLLELYLQCCYQRTWWILLWCLH 205
T P W+ +QC Y W++ CL+
Sbjct: 76 TWPGWVAGFDVQCVYSMVCWMMTVCLN 102
>02_03_0385 + 18396109-18396294,18396344-18396379
Length = 73
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 133 AALMDIAQAIVMEVYWPLAVPVTL 204
+ LM +A A+V+ VY PL++PV L
Sbjct: 9 SVLMHVAAALVVLVYIPLSMPVKL 32
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +1
Query: 310 KWRSFFSSAVNRKSDAASSEDGFWWWNRRKSGSGHKSATVQSFTTR*DEHRQCQQHRFHL 489
KW +A K+DA + E R+ G + S + +HR+ + + H
Sbjct: 1093 KWEQKLEAAAKAKADAEAKEKKLKSRKHRRRGHSSSDSESDSDSDGDRKHRKRKDRKRHR 1152
Query: 490 KH 495
KH
Sbjct: 1153 KH 1154
>12_02_0058 + 13015401-13016654
Length = 417
Score = 27.1 bits (57), Expect = 8.9
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 31 DTVPTVVMEVY-HPRAVPVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVYWPLAVPVTLM 207
D V VV +Y PRA P ++ ++ + P A + + A P VPV
Sbjct: 142 DVVEPVVCRIYVSPRAAPDSVAHQESAV--LQPQEPAPLPVPAAPAP----PRQVPVVTQ 195
Query: 208 QAPQKNPPRPLVAAL 252
QAP PP PLV +
Sbjct: 196 QAPP--PPPPLVPVI 208
>09_06_0261 - 21919017-21920594
Length = 525
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 213 CLHQCYWNCQWPIHFHHDCLSY 148
CLH+ W C P H H C Y
Sbjct: 316 CLHEFCWICLKPWHGHAACSRY 337
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 207 HQCYWNCQWPIHFHHDCLSYIHKCCYRRM 121
H Y + + ++ HH C S H CC R+
Sbjct: 614 HSAYSHLSYSLNIHH-CFSNSHFCCQGRL 641
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 300 PSVDVTLPSWLLELYLQCCYQRTW 229
PSV V + LL L CCY TW
Sbjct: 1031 PSVRVAVFEELLPRLLHCCYGSTW 1054
>07_03_0872 -
22190468-22190575,22190652-22190910,22191005-22191108,
22191245-22191423,22191565-22191670,22191797-22191940,
22192024-22192179,22192274-22192378,22192483-22192545,
22192993-22192995
Length = 408
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -3
Query: 296 RWMLRFHHGYWNYIFSAATSGRGGF--FCGACI--SVTGTASG 180
R+ML F + + A+SGRGG F G C+ + G A G
Sbjct: 96 RYMLFFLSSFGVIVLDVASSGRGGIAPFVGLCLIAAAFGVADG 138
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 286 NIHRRFQHKWRSFFSSAVNRKSDAASSEDGFWWWNRRKSGSGHKSATVQSF 438
N H R H RS F N + + +G W W R + + K TV S+
Sbjct: 585 NFHMRVMHADRSLFLITDNGLTFEYLNNNGVWLWLRHEHTTSMK-GTVGSY 634
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,761
Number of Sequences: 37544
Number of extensions: 222951
Number of successful extensions: 743
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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