Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0221.Seq
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 40 0.001
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 32 0.32
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 30 1.3
SB_36648| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 29 3.0
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 28 4.0
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7) 27 9.2
SB_7457| Best HMM Match : DUF161 (HMM E-Value=7.4) 27 9.2
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 168 HHDCLSYIHKCCY---RRMYWIL*GLCLHQCYWNCPWMIHFHHDCWNCIHKCCYR 13
H+ C + H CCY R Y+ C ++ +++ P H++H C+ H CCYR
Sbjct: 13 HNRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYR-HHYCCYR 66
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -2
Query: 246 CYQRTWWILLWCLHQ-CYWN----CQWPIHFHHDCLSYIHKCCYRRMY 118
CY+ + +C H+ CY+ C + H+H+ C + + CYR Y
Sbjct: 16 CYRHHHYCC-YCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 31.9 bits (69), Expect = 0.32
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 159 CLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFHHDCWNCIHKCC 19
C Y + CY Y+ C + CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -2
Query: 225 ILLWCLHQCYWNCQWPIHFHHDCLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFHHD 46
+L +C CY C + + + C Y + CY Y+ C + CY C + H ++
Sbjct: 466 VLRYCY--CYCYCYYYCYCY--CYYYCYYYCYCYCYY-----CCYYCY--CYYYYHHYYC 514
Query: 45 CWNCIHKC 22
C+ C C
Sbjct: 515 CYYCCCSC 522
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 159 CLSYIHKCCYRRMYWIL*GLCLHQCYWNC--PWMIHFHHDCWNCIHKCC 19
C Y + CY Y+ C CY+ C + +++H + C + CC
Sbjct: 472 CYCYCYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCC 520
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 258 YLQCCYQRTWWILLWCLHQCYWNCQWPIHFHHDCLSYIHK--CCY 130
Y C Y + +C + CY C + ++ + C Y H CCY
Sbjct: 473 YCYCYYYCYCYCYYYCYYYCYCYCYYCCYYCY-CYYYYHHYYCCY 516
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 258 YLQCCYQRTWWILLWCLHQCYWNCQWPIHFHHDCLSYIHKCC 133
Y C Y ++ +C + CY+ C ++HH Y + CC
Sbjct: 481 YCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHHYYCCY-YCCC 520
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 222 LLWCLHQCYWNCQWPIHFHHDCLSYIHKCCYR 127
LL C HQC C W HH+C + C R
Sbjct: 421 LLKCEHQCEELCAWKCR-HHECTKLCGEICDR 451
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 99 CLHQCYWNCPWMIHFHHDCWNCIHKCCYR 13
C HQC C W HH+C + C R
Sbjct: 424 CEHQCEELCAWKCR-HHECTKLCGEICDR 451
>SB_36648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 1 PVHXAVAALMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVHPAVAALMDIAQAI 162
P+ V A+ D +V+ H RA+ VT++ A +QD P V A + + +
Sbjct: 203 PIRGHVIAMPDAEIPLVLT--HARAMQVTMVMANNVQDTTGPEVGAQVSCTKTV 254
>SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 237 RTWWILLWCLHQCYWNCQWPIHFHHDCLSYIHKCCYRRMY 118
R WW + C C + P+H H+ C S+ +K C+ Y
Sbjct: 260 RMWWHGVNCTTYCVPHMD-PVHGHYTCDSHGNKTCHPGWY 298
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 25 LMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVH-PAVAALMDIAQAIVMEVYWPLAVPVT 201
++DT +V + VTL++A + ++ VH P V L+ + A V+ V+ PL V +
Sbjct: 61 ILDTGKVTSAKVVVHIPLVVTLLKATSAEEVVHIPLVVTLLKVTSAKVV-VHIPLVVTLV 119
Query: 202 LMQAPQKNPPRPLVAAL 252
+ + + PLV L
Sbjct: 120 EVTSAKVMVHIPLVVTL 136
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = -2
Query: 210 LHQCYWNCQWPIHFHHDCLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFHHDCWNCI 31
+H C C+W + D IH C + + +H C C W + D C
Sbjct: 91 IHTCKSTCRWRLDRQAD----IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCK 146
Query: 30 HKCCYR 13
C +R
Sbjct: 147 STCRWR 152
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = -2
Query: 210 LHQCYWNCQWPIHFHHDCLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFHHDCWNCI 31
+H C C+W + D IH C + + +H C C W + D C
Sbjct: 108 IHTCKSTCRWRLDRQAD----IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCK 163
Query: 30 HKCCYR 13
C +R
Sbjct: 164 STCRWR 169
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -2
Query: 210 LHQCYWNCQWPIHFHHDCLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFHHDCWNCI 31
+H C C+W + D IH C + + +H C C W I+ D C
Sbjct: 125 IHTCKSTCRWRLDRQAD----IHTCKSTCRWRLDRQADIHTCKSTCRWRINRQADIHRCK 180
Query: 30 HKC 22
C
Sbjct: 181 STC 183
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/66 (24%), Positives = 23/66 (34%)
Frame = -2
Query: 210 LHQCYWNCQWPIHFHHDCLSYIHKCCYRRMYWIL*GLCLHQCYWNCPWMIHFHHDCWNCI 31
+H C C W + D IH C + + +H C C W + D C
Sbjct: 74 IHTCKSTCPWRLDRQAD----IHTCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCK 129
Query: 30 HKCCYR 13
C +R
Sbjct: 130 STCRWR 135
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 213 CLHQCYWNCQWPIHFHHDCLSYIHKCCYRRMYWIL*GL--CLHQCYWNCPWMIHFHHDCW 40
CLH Y C +H ++CL +H C + +Y L L CLH Y C +H + C
Sbjct: 123 CLHMLY-AC---VHVLYECLHVLHACLH-VLYACLHVLHACLHVLY-AC---LHVLYACL 173
Query: 39 NCIHKCCYRXMY 4
++ C R +Y
Sbjct: 174 RVLY-ACLRVLY 184
>SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = -3
Query: 302 NRRWMLRFHHGYW----NYIFSAATSGRGGFFCG 213
+RRW+ HGYW N+ AT+G G + G
Sbjct: 521 SRRWLSEPSHGYWPQQLNFAVWCATAGCGTYNSG 554
>SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 336 G*AEEAPPLVLEPSVDVTLPSWLLELYLQCCYQRT----WWILLWCLHQCYWNCQWPIHF 169
G +E P+ LEP++D WL + + C + + +LW + W+ P+ F
Sbjct: 415 GSVQEGVPIPLEPALDTPHVYWLYQEVFRLCSGQIGPGHFVEILWHGREAVWDADDPLPF 474
>SB_12465| Best HMM Match : Ery_res_leader2 (HMM E-Value=2.7)
Length = 712
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 PVHXAVA-ALMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVY 177
PVH AV AL +P V + V A+ V L+ PVH A+ + + V V
Sbjct: 541 PVHVAVTWALRVRLPAVPVYVAVTWALRVRLLAV-----PVHVAITWALRVRLPAVRSVT 595
Query: 178 WPLAVP 195
W L P
Sbjct: 596 WALCCP 601
>SB_7457| Best HMM Match : DUF161 (HMM E-Value=7.4)
Length = 142
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 4 VHXAVAALMDTVPTVVMEVYHPRAVPVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVYWP 183
V AVA + VV+ V AV V + A + V AVA + +A A V+ V W
Sbjct: 39 VAVAVAVAVAVAVAVVVAVAVAVAVAVAVAVAVAVAVAVAVAVAVAVAVAGAAVVAVPWQ 98
Query: 184 LAVP 195
+P
Sbjct: 99 EDIP 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,021
Number of Sequences: 59808
Number of extensions: 247934
Number of successful extensions: 849
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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