Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0221.Seq
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      29   2.0  
AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    29   2.6  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 124 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 237
           P VA     A   V   Y P   P   M APQ+ PP P
Sbjct: 176 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 213


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 124 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 237
           P VA     A   V   Y P   P   M APQ+ PP P
Sbjct: 501 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 538


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 124 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 237
           P VA     A   V   Y P   P   M APQ+ PP P
Sbjct: 501 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 538


>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 264 ELYLQCCYQRTWWILLWCLHQCYWNCQWPIHF 169
           E YL+  Y + W+ L+W ++  ++ CQ+ I F
Sbjct: 121 EYYLK--YFKGWYFLIWIVYAGWFGCQYAIGF 150


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 285 TLPSWLLELYLQCCYQRTWWILLWC 211
           TL   L ++Y + C  R WW++ +C
Sbjct: 518 TLRERLEKVYRRACQLRLWWLVRYC 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,061,169
Number of Sequences: 27780
Number of extensions: 175506
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)