Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0221.Seq
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   2.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   10.0 

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 45 CWNCIHKCCYRXMYW 1
          C NCIH   +  ++W
Sbjct: 35 CRNCIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 45  CWNCIHKCCYRXMYW 1
           C NCIH   +  ++W
Sbjct: 483 CRNCIHPTVFSVLFW 497


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 312 LVLEPSVDVTLPSWLLELY 256
           LV E S  +TLPSW   ++
Sbjct: 181 LVAEQSYGLTLPSWTNNIF 199


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 312 LVLEPSVDVTLPSWLLELY 256
           LV E S  +TLPSW   ++
Sbjct: 196 LVAEQSYGLTLPSWTNNIF 214


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 312 LVLEPSVDVTLPSWLLELY 256
           LV E S  +TLPSW   ++
Sbjct: 84  LVAEQSYGLTLPSWTNNIF 102


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 79  PVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVYWPL 186
           P+T  Q QT+   + P    +  +  A V   Y PL
Sbjct: 165 PLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPL 200


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +1

Query: 379 WWWNRRKS 402
           WWWN + S
Sbjct: 366 WWWNMKIS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,827
Number of Sequences: 438
Number of extensions: 2149
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)