Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0220.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   2.7  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   3.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   4.8  

>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 20/88 (22%), Positives = 36/88 (40%)
 Frame = +3

Query: 78  LIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGR 257
           L+ +  T   +   A  +  +S G +VHA  RAA    +  A  CL   K   ++     
Sbjct: 45  LVSEPKTIPCLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKKFFCNVNNWNW 104

Query: 258 ICSLWSPESREALNNVTLLVAFRIQNAR 341
           + S+      +  N  + L  F+ ++ R
Sbjct: 105 LMSVSKYSHLQEKNRTSFLQVFKERSKR 132


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 135 NRSFGHLVHALGRAAGG--AKLPSAGLCLNASKAEASLAESGRICSLWSPESREAL 296
           NR++ H  + LG +       LPSAG  +N   A  S + +G +       SRE L
Sbjct: 137 NRNYHHKQNVLGPSVKDEFVDLPSAGSQINGIDAVLSSSSNGHVTPGSKKGSRETL 192


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 6   LRPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVS 113
           LRP++  + H     ALN   L GL   ++  +VVS
Sbjct: 381 LRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVS 416


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 262 HILPDSARLASALEAFRHNPAD 197
           H LPD  RL S + A R  PAD
Sbjct: 746 HKLPDLERLISRVHAGRSKPAD 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,947
Number of Sequences: 5004
Number of extensions: 39297
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)