Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0220.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 30 0.90
11_01_0731 - 6060680-6060982 30 1.2
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 1.6
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.6
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 29 1.6
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 29 2.1
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 29 2.7
02_05_0695 + 30990070-30990269,30990399-30990459,30990793-309910... 29 2.7
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 3.6
12_01_0941 - 9316051-9316056,9316747-9317082 28 4.8
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 28 4.8
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 28 4.8
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204 28 4.8
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 27 6.3
07_03_0626 + 20060013-20060273,20061017-20061274 27 6.3
06_01_0957 - 7378608-7378662,7378828-7379012 27 6.3
04_04_0873 - 28905240-28906061 27 6.3
04_03_0046 + 10114402-10114535,10116438-10117365 27 6.3
03_06_0197 - 32271760-32271922,32272134-32272303 27 6.3
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 8.4
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 8.4
01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297 27 8.4
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 30.3 bits (65), Expect = 0.90
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 91 ASPSWWSVILLSTRGTAVSD 150
+SPSWWSV+++ RG D
Sbjct: 176 SSPSWWSVVMVKARGMGPRD 195
>11_01_0731 - 6060680-6060982
Length = 100
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 147 GHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGRICSLW 272
G HALG GG + +AG C E ++ G +LW
Sbjct: 8 GSATHALGSDNGGRRAAAAGACDGDVAGEEAMGHGGGGLALW 49
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 69 LQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAE 248
+QG +F ++ +++ + + GHL++A+ G P +++S A+L E
Sbjct: 1031 VQGTLFLAMEILLLEENGYVDLRQEIGHLINAIVAVIGPELAPE----ISSSSETATLIE 1086
Query: 249 SGRICS---LWSPESREALNNVTLLV 317
S R L++P++ ++V L+
Sbjct: 1087 SVRFAQQLVLFAPQAVPVHSHVQSLI 1112
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 147 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 245
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 168 GRAAGGAKLPSAGLCLNASKAEASLAESGRICSLWSPESR 287
G AGG + P+A A+ A A E G + S W+PE R
Sbjct: 7 GAGAGGEERPAAS---PAAPAVAEAVEEGPVTSRWAPEIR 43
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 1 RTYGQCFVSYHTPQ 42
+TYG CF+ Y+TPQ
Sbjct: 108 KTYGYCFIEYNTPQ 121
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 417 GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 301
G V+ L + TDS++ L +P+GL RRV F E+++ H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382
>02_05_0695 +
30990070-30990269,30990399-30990459,30990793-30991001,
30991295-30991382
Length = 185
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 9 RPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFG 149
R L+F++ TP PS+L ++ L GL+ KS + N A R S G
Sbjct: 47 RQQLQFLTKTPSPSSLPSS-LPGLLGKSPVRPALCNDALLSRFLSTG 92
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 186 AKLPSAGLCLNASKAEASL-AESGRICSLWSPESREALNNVTLLVAFRIQNARRDVEA 356
A+LP L + E + A R C W PESR ++ V ++A ++R+ A
Sbjct: 426 AELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>12_01_0941 - 9316051-9316056,9316747-9317082
Length = 113
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 234 ASLAESGRICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGD 374
ASLAE L PE ++ + +L+AF+ Q AR +EA LD D
Sbjct: 24 ASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARL-LEASLDDHD 69
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 234 ASLAESGRICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGD 374
ASLAE L PE ++ + +L+AF+ Q AR +EA LD D
Sbjct: 22 ASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL-LEASLDDHD 67
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +3
Query: 225 KAEASLAESGRICSLWSPESREALNNV-TLLVA---FRIQNARRDVEAHLDRGDRCYRFF 392
KA + +GR+ + WSP+ ++ +N+ +L+A R + D++ ++ ++ F+
Sbjct: 254 KAGDDVVVTGRLSAKWSPDIKDVRSNLDPMLIANFVRRTNELKSDLDIPVEIINKFEEFW 313
Query: 393 FLTRASRLRRSGYNSV 440
+RA+ L+ G NS+
Sbjct: 314 AASRATPLK--GRNSI 327
>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
Length = 306
Score = 27.9 bits (59), Expect = 4.8
Identities = 25/91 (27%), Positives = 34/91 (37%)
Frame = +3
Query: 177 AGGAKLPSAGLCLNASKAEASLAESGRICSLWSPESREALNNVTLLVAFRIQNARRDVEA 356
+GGA A S+ +LA+ S ++ EA+ + A A R A
Sbjct: 53 SGGAAKCRAFWKEQQSQLYEALAKMSSAESRIQADAEEAMRQMRAAAAGACSCASRGAAA 112
Query: 357 HLDRGDRCYRFFFLTRASRLRRSGYNSVRCR 449
C A RLR +GYNS CR
Sbjct: 113 AAAGSGGCRSCTLRFLAERLRDAGYNSAICR 143
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 304 TLFRASRLSGLHSEHILPDSARLASALE---AFRHNPAD 197
T+ R R +G +LPD LASA + +FR++P D
Sbjct: 60 TVGRYHRAAGSCQSDVLPDEQSLASAFDMVLSFRNHPVD 98
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 246 RLGWLRP*RRSGIIP 202
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>06_01_0957 - 7378608-7378662,7378828-7379012
Length = 79
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 411 VMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 286
++ LR T +I +R P L R S R+ SH + PP
Sbjct: 14 LLDALRTTTAAIRVRAPAALSRAASEKIAVPRIAPSHAVPPP 55
>04_04_0873 - 28905240-28906061
Length = 273
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 6 LRPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGR 173
L P+++++ P P ALN AL Q + + V F + E+ F +V ++GR
Sbjct: 196 LLPLMKWLFCQPNPIALNTALAQLGVARPV-FRLPYVPLPLEKRVEFVRIVESIGR 250
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 6 LRPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGR 173
L P+++++ P P ALN AL Q + + V F + E+ F +V ++GR
Sbjct: 276 LFPLMKWLFCQPNPIALNTALAQLGVVRPV-FRLPYVPLPLEKRVEFVRIVESIGR 330
>03_06_0197 - 32271760-32271922,32272134-32272303
Length = 110
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 185 CEATIRGIMPERL*GRSQPSRIRQDMLTVEPRESGGSK 298
C AT+ G ++L G+ Q + R+ V PRE+GG +
Sbjct: 14 CAATLGG--RQQLAGQGQAAARRRGRAAVRPREAGGQR 49
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 237 SLAESGRICSLWSPESREALNNV 305
S+ E G +CS SPE R A+N+V
Sbjct: 1012 SIFELGLLCSSESPEQRMAMNDV 1034
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 284 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 382
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297
Length = 743
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +3
Query: 84 FKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGRIC 263
F + M + A YE R F + AAG LP + ++ GR+
Sbjct: 361 FDKLKDMHYVHAAMYESMRLFPPVQFDSKFAAGDDTLPDGTVVAKGTRVTYHAYAMGRME 420
Query: 264 SLWSPESRE 290
S+W P+ E
Sbjct: 421 SVWGPDCAE 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,993
Number of Sequences: 37544
Number of extensions: 304797
Number of successful extensions: 937
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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