Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0220.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 28 3.7
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0) 27 8.6
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 27 8.6
SB_26419| Best HMM Match : zf-nanos (HMM E-Value=6.5) 27 8.6
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 384 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 280
DS ++DP G+RR++ F E R V L+ D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 1.6
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +2
Query: 131 EEPQFRTFGSCTRPSGRWCEATIRGIMPERL*GRSQPSRIRQDMLTVEPRESGGSKQCDF 310
E PQ T S RP R R ER S P R R + PR + ++
Sbjct: 1032 ESPQRVTKSSKERPRKR-----PRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSR 1086
Query: 311 TSRVSHS--KRETRRRSPFGS 367
SR S S KRE RRRSP S
Sbjct: 1087 GSRRSPSPPKREPRRRSPSAS 1107
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 119 CSVREEPQFRTFGSCTRPSG 178
CS R P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456
>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 286 RLSGLHSEHILPDSARLASALEAFRHN 206
R +G HSE I+ S R+ L+ FRHN
Sbjct: 648 RETGTHSELIMTFSPRVFQNLKGFRHN 674
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -1
Query: 454 KPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWAS 350
+PRH EL PD+R D RV ++ R R P SK A+
Sbjct: 1467 RPRHPDELRPDIR-HDIRVAQERREGR-PDSKDAT 1499
>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 118 LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 210
LLS G A++D+ +H A+ P +Y P Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 328 MRNATSKVTLFRASRLSGLHSEHILPDSARLAS-ALEAFRHNPA 200
+R TSKV ++ ++ + HSE + S +L+S A + H+PA
Sbjct: 766 LRPRTSKVAVWETAQATTQHSESVSETSPQLSSTAQQTPPHSPA 809
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 457 PKPRHRTELYPDLRSRD-ARVKK 392
P P+HR EL+PD R AR +K
Sbjct: 1228 PPPKHRDELHPDTTKRGRARAEK 1250
>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
Length = 965
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 486 SNSRPATRLFRSP-DIELSYIRTFGAVMHVLRKKTDSIDL 370
S +P+ RL +P ++ IRTF A + + +K DS+ +
Sbjct: 908 SAKQPSLRLANTPVELRPMQIRTFKATLRMKKKSKDSVQM 947
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 311 TSRVSHSKRETRRRSPFGSRRSMLSVFFLNTCITAPKVRI*LSSMSGLRNSLVAGREFDI 490
TSR + KR + SP SRR+ L + T+PK + S + L+ SL A + +
Sbjct: 111 TSRKTSLKRSLKT-SPKTSRRTSLKTSQKTSPKTSPKTSLKTSLKTSLKTSLKASLKTSL 169
Query: 491 K 493
K
Sbjct: 170 K 170
>SB_26419| Best HMM Match : zf-nanos (HMM E-Value=6.5)
Length = 198
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 72 QGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAK 191
Q +K +T+ YE NR G+++ LG+ GA+
Sbjct: 141 QNCDWKHITYTSKVQGQSYEVNRRLGYIMRTLGKGHTGAR 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,853
Number of Sequences: 59808
Number of extensions: 322157
Number of successful extensions: 875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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