Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0220.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated...    29   9.0  
AB029032-1|BAA83061.2| 3086|Homo sapiens KIAA1109 protein protein.     29   9.0  

>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
            protein protein.
          Length = 5005

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 171  RAAGGAKLPSAGLCLNASKAEASLAESGRICSLWSPESREALNNVTLLVAFRIQNARRDV 350
            R+ G +   S  +  +ASK + +L     +C + S   +  +  ++ ++AF     RR +
Sbjct: 4217 RSGGASFFESQSVSKSASKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSI 4276

Query: 351  EAHLDRGDR 377
               L  GD+
Sbjct: 4277 ARRLFLGDQ 4285


>AB029032-1|BAA83061.2| 3086|Homo sapiens KIAA1109 protein protein.
          Length = 3086

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 171  RAAGGAKLPSAGLCLNASKAEASLAESGRICSLWSPESREALNNVTLLVAFRIQNARRDV 350
            R+ G +   S  +  +ASK + +L     +C + S   +  +  ++ ++AF     RR +
Sbjct: 2298 RSGGASFFESQSVSKSASKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSI 2357

Query: 351  EAHLDRGDR 377
               L  GD+
Sbjct: 2358 ARRLFLGDQ 2366


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,563,896
Number of Sequences: 237096
Number of extensions: 1510577
Number of successful extensions: 3349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3349
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)