Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0220.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like ... 31 0.61
AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to SU... 31 0.61
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 3.3
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 28 3.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 3.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 3.3
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 28 4.3
U58728-1|AAB00588.1| 430|Caenorhabditis elegans Temporarily ass... 27 5.7
AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 27 10.0
>U23412-4|AAK21468.3| 697|Caenorhabditis elegans Ubiquitin-like
protease protein 1 protein.
Length = 697
Score = 30.7 bits (66), Expect = 0.61
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 305 DFTSRVSHSKRETRRRSPFGSR-RSMLSVFFLNTCITAPKVRI*LSSMSGLRNSLVAGRE 481
D+ R S K E RR P + + SV +NT I K++ LSS L +VA +
Sbjct: 249 DYWRRNSAKKPEVLRRVPVRHQFKHSTSVRKMNTIIDLKKIKNHLSSRDRLLQGVVASGQ 308
Query: 482 FDIKLI 499
++ K I
Sbjct: 309 YEAKAI 314
>AB095020-1|BAC22612.1| 697|Caenorhabditis elegans similar to
SUMO-1-specific protease protein.
Length = 697
Score = 30.7 bits (66), Expect = 0.61
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 305 DFTSRVSHSKRETRRRSPFGSR-RSMLSVFFLNTCITAPKVRI*LSSMSGLRNSLVAGRE 481
D+ R S K E RR P + + SV +NT I K++ LSS L +VA +
Sbjct: 249 DYWRRNSAKKPEVLRRVPVRHQFKHSTSVRKMNTIIDLKKIKNHLSSRDRLLQGVVASGQ 308
Query: 482 FDIKLI 499
++ K I
Sbjct: 309 YEAKAI 314
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 213 LNASKAEASLAE--SGRICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYR 386
LN ++ +SL S ++ +W E A + LV A+ DVEA L +GDR
Sbjct: 1273 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--P 1329
Query: 387 FFFLTRASR 413
F T ASR
Sbjct: 1330 FMIYTDASR 1338
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 274 LHSEHILPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 128
L +LPD + ++S+L HNP ++ TK PKL LS
Sbjct: 31 LDHHSLLPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 213 LNASKAEASLAE--SGRICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYR 386
LN ++ +SL S ++ +W E A + LV A+ DVEA L +GDR
Sbjct: 1176 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--P 1232
Query: 387 FFFLTRASR 413
F T ASR
Sbjct: 1233 FMIYTDASR 1241
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 213 LNASKAEASLAE--SGRICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYR 386
LN ++ +SL S ++ +W E A + LV A+ DVEA L +GDR
Sbjct: 1187 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDR--P 1243
Query: 387 FFFLTRASR 413
F T ASR
Sbjct: 1244 FMIYTDASR 1252
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 135 NRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGRICS--LWSPESREALNNVT 308
N G L + + + A L S +N S A RI L SP+ RE N
Sbjct: 209 NDRVGSLTVIVNKPSHIANLKSQLTLVNVSNFSNPPAYGARIVHEILKSPKYREQWQNSI 268
Query: 309 LLVAFRIQNARRDVEAHLD 365
++AFRI+ R+++ L+
Sbjct: 269 KMMAFRIKKTRQELIRELN 287
>U58728-1|AAB00588.1| 430|Caenorhabditis elegans Temporarily
assigned gene nameprotein 294 protein.
Length = 430
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 137 PQFRTFGSCTRPSGRWCEATIRGIMPERL*GR-SQPSRIRQDMLTVEPRESG 289
P T T P+ + E +I +PER+ + +QPS + D+L V R +G
Sbjct: 273 PSTSTASVSTHPTEKPKEDSILQHLPERIVKKLNQPSSLNYDLLKVHKRMTG 324
>AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical
protein Y48G10A.2 protein.
Length = 375
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 242 SRIRQDMLTVEPRESGGSKQCDFTSRVSHSKRETR 346
+R+ + ++ EP+E+ + D+ + ++HSK E +
Sbjct: 322 TRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,770
Number of Sequences: 27780
Number of extensions: 231284
Number of successful extensions: 608
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -