Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0220.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07738.1 68415.m00989 hypothetical protein                          28   3.0  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    27   7.0  
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    27   7.0  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    27   7.0  
At1g22870.1 68414.m02855 protein kinase family protein contains ...    27   9.3  

>At2g07738.1 68415.m00989 hypothetical protein
          Length = 88

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +3

Query: 9   RPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGA 188
           R +L     TPK      +  Q L+ +S+ F   S   +    + F HL   +G++  G+
Sbjct: 11  RKILNLRLSTPK-IFFGLSFHQTLVKESLGFGATSVRLEPSCIQDFDHLAEEIGKSYIGS 69

Query: 189 KLPSAGLCLNASKAEASL 242
           ++PS G     S++++ +
Sbjct: 70  RVPSKGSSSTKSESDSQV 87


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 414 AVMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISCRIR 244
           A MH +R   D ++L +   + R V       R  +SHC+     RG  V     +R
Sbjct: 636 ASMHCVRSTEDVLELMNIGLMNRTVGATALNERSSRSHCVLSVHVRGVDVETDSILR 692


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 414 AVMHVLRKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISCRIR 244
           A MH +R   D ++L +   + R V       R  +SHC+     RG  V     +R
Sbjct: 636 ASMHCVRSTEDVLELMNIGLMNRTVGATALNERSSRSHCVLSVHVRGVDVETDSILR 692


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
            PF04819: Family of unknown function (DUF716) (Plant
            viral-response family)
          Length = 1206

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = -1

Query: 457  PKPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWASTSRLAF*MRNATSKVTLFRASRLS 278
            P PR   E Y    S    V   +   + PRS  A+ SR      +  +    +++S LS
Sbjct: 767  PSPRVSKEPY---MSSSLSVSSSSTRKKPPRSHEAANSRGYNHTPSLRASKEPYKSSSLS 823

Query: 277  GLHSEHILPDSARLASALEAFRHNPA 200
            G  S    P  +  AS+   + H P+
Sbjct: 824  GSSSTRKKPPRSHEASSSRGYNHPPS 849


>At1g22870.1 68414.m02855 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 913

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 356 PFGSRRSMLSVFFLNTCITAPKVRI*LSSMSGLRNSLVAGREF 484
           P  +  S  S  F N+  T P +    +S SGLRN+L  GR+F
Sbjct: 753 PRPNSASTASGGFHNSTTTQPPIN---NSGSGLRNNLTDGRQF 792


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,555
Number of Sequences: 28952
Number of extensions: 223717
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)