Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0219.Seq
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914...    32   0.27 
07_03_0812 - 21694348-21694632,21695392-21695574,21696366-21697526     29   2.5  
07_03_0340 + 16949105-16949109,16949328-16949436,16949547-169496...    28   4.4  
07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342...    28   5.8  
01_06_1693 + 39238710-39238805,39239051-39239293,39239388-392395...    27   7.7  

>03_02_0643 -
           10090720-10091007,10091121-10091228,10091314-10091400,
           10091488-10091568,10091669-10091803,10091919-10092140,
           10092377-10092457,10092565-10092726,10092851-10093041,
           10093190-10093331,10093449-10093547,10093668-10093806,
           10094355-10094392
          Length = 590

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 246 YPGLQPKTNESKYYRYVFEKSFPGQHNFTPYYWMPKWVQVSDPSA 112
           YP   P   E+ YYR +FE+ FP +       W P  +  S P+A
Sbjct: 472 YPHNTPVNKEAYYYRMIFERLFPQESARETVPWGPS-IACSTPAA 515


>07_03_0812 - 21694348-21694632,21695392-21695574,21696366-21697526
          Length = 542

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 19  IYFYYHPKITLTLIIL*VYELSFCRIMFNKPCRRV*NLNPFWHPIV 156
           +YF   P++  TL+   VY     R++FN+ C+ + NL P  + +V
Sbjct: 336 VYFNRMPRLR-TLVPPAVYPYGLQRVLFNRSCQMLLNLCPSIYRVV 380


>07_03_0340 +
           16949105-16949109,16949328-16949436,16949547-16949642,
           16949685-16949771,16952658-16953299
          Length = 312

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 199 VAVIFGFIRFRLQSWILYMSSCNLSVVISFMTENNDFLTEDTPSLNASL 345
           V  +F  + FRL ++ LY+  C+L    +   E+   L  D   L  S+
Sbjct: 3   VKAVFVDVSFRLIAFALYLHQCHLKFAYTHGIESKQLLHHDEGMLGMSM 51


>07_03_1549 -
           27633229-27633340,27633418-27633509,27633601-27634270,
           27634731-27634870,27634958-27635299
          Length = 451

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -2

Query: 389 FAKSGLLPDCVLWRHKEAFSDGVSSVKKSLFSVIKEITTERLQEDIYNIQDCSRKRMNPN 210
           F    L  D + W    + S  +  ++  L S     +TE  Q     I++C RKR N  
Sbjct: 150 FRSPTLFEDMIKWTRTLSMSTALCELQLELRS---SSSTENFQSRTPPIRECKRKRSNKR 206

Query: 209 ITATYLRNHF-QDNIILL 159
                L   F +D ++ L
Sbjct: 207 NVRVKLETKFNEDKMVCL 224


>01_06_1693 +
           39238710-39238805,39239051-39239293,39239388-39239573,
           39239654-39239902,39240012-39240251
          Length = 337

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 225 TNESKYYRYVFEKSFPGQHNF 163
           TN S + R +F++  PG+HNF
Sbjct: 20  TNLSPFVRKLFKEVLPGEHNF 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,788
Number of Sequences: 37544
Number of extensions: 280002
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)