Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0219.Seq
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)                61   5e-10
SB_32549| Best HMM Match : Asn_synthase (HMM E-Value=3.4e-33)          48   7e-06
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   29   1.9  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_5769| Best HMM Match : COX2_TM (HMM E-Value=4.5)                    27   7.9  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)                27   7.9  

>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
          Length = 1663

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
 Frame = -2

Query: 446  PPKLTQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVSS--VKKSLFSVIK 285
            PP   QP+ GVEK LLR++F  +GLLP  +LWR KEAFSDGV+S    KS F +++
Sbjct: 1566 PPAERQPKEGVEKWLLRAAFDGTGLLPHEILWRPKEAFSDGVTSNAPGKSWFEILQ 1621



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 246  YPGLQPKTNESKYYRYVFEKSFP 178
            YP   P+T ES YYR VFE+ FP
Sbjct: 1640 YPFNTPRTKESFYYRSVFEELFP 1662


>SB_32549| Best HMM Match : Asn_synthase (HMM E-Value=3.4e-33)
          Length = 274

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = -2

Query: 431 QPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVSSVK--KSLFSVIKEITTERLQE 258
           QP+ GVEK LLR+++  +G+LP  +LWR K  FS GVS  +  KS    I+     R+ +
Sbjct: 147 QPRGGVEKWLLRAAYDGTGILPGEILWRTKTPFSTGVSGSQPGKSWLEYIEVYAEHRVSD 206


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 267  ITRRHIQYPGLQPKTNESKYYRYVFEKSFPGQHNFTPYYWMP 142
            ITR+ + Y   + K N +  +++VF + + G   F    W P
Sbjct: 892  ITRKFVDYADYEEKPNYALPHKHVFNEQYLGNKPFVVLNWEP 933


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 209 ITATYLRNHFQDNIILLRTIGCQNGF 132
           IT T+LRNH  +N+I +  +G  + F
Sbjct: 471 ITETWLRNHIHNNVIAVSALGMSDHF 496


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 209 ITATYLRNHFQDNIILLRTIGCQNGF 132
           IT T+LRNH  +N+I +  +G  + F
Sbjct: 182 ITETWLRNHIHNNVIAVSALGMSDHF 207


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -2

Query: 413 EKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVSSVKKSLFSVIKEITTERLQEDIYNIQDC 234
           EK L+  +F    L    ++ RH    ++G  ++ KSL    K +   R+  + + + D 
Sbjct: 255 EKDLVPVTFLTERLKEPGIVMRHHGLGAEGTLAIAKSLMVCNKPVQRLRMTGEEWVVSDP 314

Query: 233 SRKRMNPNITATYLRN-HFQDNII 165
           S +  NP    TY  N    DN I
Sbjct: 315 SEQ--NPPEKNTYTENLDLTDNYI 336


>SB_5769| Best HMM Match : COX2_TM (HMM E-Value=4.5)
          Length = 152

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 216 SKYYRYVFEKSFPGQHNFTPYYWMPKWVQVS 124
           S  YR    K FP  H F    +MPK  QV+
Sbjct: 108 STRYRKALAKLFPKDHRFAEKLYMPKGNQVT 138


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 162 TPYYWMPKWVQVSD 121
           TP YW+ KWV  SD
Sbjct: 425 TPVYWVSKWVDYSD 438


>SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)
          Length = 474

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 356 LWRHKEAFSDGVSSVKKSLFSVIKEITTERLQEDIYNIQD-CSRKRMNPNITATY 195
           LW+ K+   D V  +KKS    +KE   +RLQ+ +  ++  C    +N   +A +
Sbjct: 254 LWQRKKELRDQVLGIKKSRSLALKE-QQQRLQKSLQLLRHACKFTEINVTTSANH 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,590
Number of Sequences: 59808
Number of extensions: 345055
Number of successful extensions: 927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)