Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0219.Seq
         (558 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3472|AAS65085.1|  558|Drosophila melanogaster CG33486-P...    44   2e-04
BT004912-1|AAO49165.1|  289|Drosophila melanogaster GM01885p pro...    29   5.6  
AE013599-2460|AAF57869.1|  289|Drosophila melanogaster CG4802-PA...    29   5.6  

>AE014296-3472|AAS65085.1|  558|Drosophila melanogaster CG33486-PA
           protein.
          Length = 558

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -2

Query: 425 QNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGV 321
           Q  +EK++LR++FA +  LPD VLWR KE FSDGV
Sbjct: 439 QKRLEKYVLRAAFADN-YLPDEVLWRQKEQFSDGV 472



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 252 IQYPGLQPKTNESKYYRYVFEKSFPGQHNF-TPYYWMPK--WVQVSDPSAR 109
           +++P   P T E+ YYR +F + FPG+    T   W+P+  W    DPS R
Sbjct: 498 LRFPFNTPTTKEAFYYRCIFAEQFPGESAARTVVRWVPRLDWGCPEDPSGR 548


>BT004912-1|AAO49165.1|  289|Drosophila melanogaster GM01885p
           protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 335 FSDGVSSVKKSLFSVIKEITTERLQEDIYNIQDC 234
           F++ V  VKK L + +  I  E   EDI N + C
Sbjct: 246 FAENVIKVKKILVNAVGRIAKEDWSEDILNAKQC 279


>AE013599-2460|AAF57869.1|  289|Drosophila melanogaster CG4802-PA
           protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 335 FSDGVSSVKKSLFSVIKEITTERLQEDIYNIQDC 234
           F++ V  VKK L + +  I  E   EDI N + C
Sbjct: 246 FAENVIKVKKILVNAVGRIAKEDWSEDILNAKQC 279


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,512,621
Number of Sequences: 53049
Number of extensions: 503667
Number of successful extensions: 1132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)