Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0219.Seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    48   5e-06
U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical pr...    40   0.001
U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z29116-2|CAA82368.3|  374|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    28   4.0  
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    28   5.2  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    28   5.2  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    28   5.2  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    27   6.9  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    27   6.9  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    27   9.1  

>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
 Frame = -2

Query: 512 CLSLEYEYRFXXXXXXXXXXXIPPKLTQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAF 333
           C  LE    F           +PP        +EKH+LRS+F   G LPD VLWR KE F
Sbjct: 384 CHGLEIRVPFLDKRFIDLVSRLPPSYKLMPMKLEKHVLRSAF--EGWLPDEVLWRSKEGF 441

Query: 332 SDGVSSVKKSLFSVIKEITTERLQEDIYNIQDCSRKRMNPNITATY-LRNHFQDNII 165
           ++ +   K  L  ++ E   + + + +Y  +        P  T  Y  R  F+D  +
Sbjct: 442 AEALG--KTDLGDILAEHCDKLISKSLYERRAERFPDRTPETTEEYWYRQIFEDTFV 496


>U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical
           protein M02D8.4c protein.
          Length = 538

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 446 PPKLTQPQNGVEKHLLRSSFAKSGL--LPDCVLWRHKEAFSDGV 321
           P KL   +N  EK +LRS+F       LPD +LWR KE FSDGV
Sbjct: 416 PQKLEDGRN-CEKFVLRSAFNTDQYPYLPDEILWRQKEQFSDGV 458



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 246 YPGLQPKTNESKYYRYVFEKSFPG-QHNFTPYYWMPKWVQVSDPS 115
           +P   P + E+ Y R +F + FP  Q   T   W+PKW +  DPS
Sbjct: 486 FPHNTPHSKEAFYMRKIFHEQFPSEQAALTVRKWIPKWQKNQDPS 530


>U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical
           protein M02D8.4a protein.
          Length = 567

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 446 PPKLTQPQNGVEKHLLRSSFAKSGL--LPDCVLWRHKEAFSDGV 321
           P KL   +N  EK +LRS+F       LPD +LWR KE FSDGV
Sbjct: 416 PQKLEDGRN-CEKFVLRSAFNTDQYPYLPDEILWRQKEQFSDGV 458



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 246 YPGLQPKTNESKYYRYVFEKSFPG-QHNFTPYYWMPKWVQVSDPSAR 109
           +P   P + E+ Y R +F + FP  Q   T   W+PKW +  DPS R
Sbjct: 486 FPHNTPHSKEAFYMRKIFHEQFPSEQAALTVRKWIPKWQKNQDPSGR 532


>Z29116-2|CAA82368.3|  374|Caenorhabditis elegans Hypothetical
           protein ZK507.3 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 205 VIFGFIRFRLQSWILYMSSCNLSVV--ISFMTENNDFLTEDTPSLNASLCRHSTQSG 369
           V FGF+R  +     Y  SC L++   + +  E ND  +  TP+ +A+ C  S+ +G
Sbjct: 271 VKFGFLRDAITD---YARSCKLTLKEPLVWFKERNDNESGSTPTTSATACSPSSSTG 324


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -1

Query: 264 TRRHIQYPGLQPKTNESKYYRYVFEKSFPGQHNFTPYYWMPKWVQVSDPSARFIKH 97
           +++H  +  ++ +TN +K++R++ E S  G +    Y ++P    V    A  + H
Sbjct: 187 SKKHNCHVMMKTETNSAKFHRFILEHSLAGVYY---YEYLPNMTDVYKIPAMILPH 239


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -1

Query: 264 TRRHIQYPGLQPKTNESKYYRYVFEKSFPGQHNFTPYYWMPKWVQVSDPSARFIKH 97
           +++H  +  ++ +TN +K++R++ E S  G +    Y ++P    V    A  + H
Sbjct: 187 SKKHNCHVMMKTETNSAKFHRFILEHSLAGVYY---YEYLPNMTDVYKIPAMILPH 239


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 256 SSCNLSVVISFMTENNDFLTEDTPSLNASLCRHSTQSGNNPLFAKLLLNRCFSTPFWGCV 435
           SSC  S+ I  + E  DF T  T +    LC    +S  +P+   L   +   +     V
Sbjct: 277 SSCQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPVEKSLRDAKMDKSQVHDIV 336

Query: 436 SLGGIERI 459
            +GG  RI
Sbjct: 337 LVGGSTRI 344


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
            protein Y71H2AM.15a protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 22/91 (24%), Positives = 37/91 (40%)
 Frame = -2

Query: 446  PPKLTQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVSSVKKSLFSVIKEITTER 267
            PP +  PQ       L+ +   S ++    ++ +KE+    VS +   L  V    +  R
Sbjct: 797  PPPMLPPQQSQLAQSLQLAATSSNVVKVAPMYEYKESPKSPVSDLDNVLEEVGDPGSIPR 856

Query: 266  LQEDIYNIQDCSRKRMNPNITATYLRNHFQD 174
                 Y++QD  +K   P      LRN  +D
Sbjct: 857  -PPSRYSVQDVRQKFSKPPELPDQLRNLIED 886


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 22/91 (24%), Positives = 37/91 (40%)
 Frame = -2

Query: 446 PPKLTQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVSSVKKSLFSVIKEITTER 267
           PP +  PQ       L+ +   S ++    ++ +KE+    VS +   L  V    +  R
Sbjct: 696 PPPMLPPQQSQLAQSLQLAATSSNVVKVAPMYEYKESPKSPVSDLDNVLEEVGDPGSIPR 755

Query: 266 LQEDIYNIQDCSRKRMNPNITATYLRNHFQD 174
                Y++QD  +K   P      LRN  +D
Sbjct: 756 -PPSRYSVQDVRQKFSKPPELPDQLRNLIED 785


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 478 YPIHSSLSFQYLLNLRNPKTALRNIC*EVVLQKVDYCQTV 359
           Y  H S+  + ++   N  T +R++    VLQ V YC+ V
Sbjct: 573 YSYHDSIRLRRMIEEGNTTTGVRSMHLNNVLQVVAYCENV 612


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 478 YPIHSSLSFQYLLNLRNPKTALRNIC*EVVLQKVDYCQTV 359
           Y  H S+  + ++   N  T +R++    VLQ V YC+ V
Sbjct: 573 YSYHDSIRLRRMIEEGNTTTGVRSMHLNNVLQVVAYCENV 612


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 13  PTIYFYYHPKITLTLIIL*VYELSFCRIMFNKPCRRV*NLNPFWHPIVRSKIMLSW 180
           P  Y+  + +IT T II+ +++++    + N          PFW PI R    ++W
Sbjct: 469 PMYYYKRYIRITPTYIIVMLFDVTLFTYISN---------GPFWRPIERQGCSIAW 515


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 13  PTIYFYYHPKITLTLIIL*VYELSFCRIMFNKPCRRV*NLNPFWHPIVRSKIMLSW 180
           P  Y+  + +IT T II+ +++++    + N          PFW PI R    ++W
Sbjct: 469 PMYYYKRYIRITPTYIIVMLFDVTLFTYISN---------GPFWRPIERQGCSIAW 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,828,295
Number of Sequences: 27780
Number of extensions: 274583
Number of successful extensions: 821
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)