Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0219.Seq
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    24   1.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    24   1.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   6.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   6.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   6.4  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 383 KSGLLPDCVLWRHKEAFSDGVSSVKKSLFSVIKEITTERLQEDIYN-IQDCSRK 225
           K G    CV    K  F DG +   + L S  +E+T +   ED++  I+ C  K
Sbjct: 51  KLGCFEACVF--QKLHFMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSK 102


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 383 KSGLLPDCVLWRHKEAFSDGVSSVKKSLFSVIKEITTERLQEDIYN-IQDCSRK 225
           K G    CV    K  F DG +   + L S  +E+T +   ED++  I+ C  K
Sbjct: 51  KFGCFEACVF--QKLHFMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSK 102


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 344 KEAFSDGVSSVKKSLFSVIKEITTERLQEDIYNIQDCSRKRMNPNI 207
           ++ FS  + + +K    +I      R  ED  ++    R R+NPN+
Sbjct: 79  RQPFSLFIPAHRKIAARLIDIFMGMRTYEDFLSVAVYCRDRLNPNL 124


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 119 LRQGLLNIMRQNDNSYTYKIINVNV 45
           L   ++ +  + D SYT K  N+NV
Sbjct: 10  LMAAIVLVAARPDESYTSKFDNINV 34


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 119 LRQGLLNIMRQNDNSYTYKIINVNV 45
           L   ++ +  + D SYT K  N+NV
Sbjct: 10  LMAAIVLVAARPDESYTSKFDNINV 34


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 119 LRQGLLNIMRQNDNSYTYKIINVNV 45
           L   ++ +  + D SYT K  N+NV
Sbjct: 10  LMAAIVLVAARPDESYTSKFDNINV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,739
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)