Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0218.Seq
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   3.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   3.5  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   3.5  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   4.7  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    25   8.1  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 226 WTVFNFPNPKNIIYKQKFIKKLLYLCTH 309
           ++VF  PN  +I+ +  F+KK++Y   H
Sbjct: 192 YSVFPTPNSVSIVEENPFLKKIIYDIHH 219


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 226 WTVFNFPNPKNIIYKQKFIKKLLYLCTH 309
           ++VF  PN  +I+ +  F+KK++Y   H
Sbjct: 192 YSVFPTPNSVSIVEENPFLKKIIYDIHH 219


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 167 LYYRKWIKMCSSDHIAKQKVGQFLTSLTPK--T*YINKNS*KNFCTYV 304
           +Y   W+ +    HIAK +  +   ++T +    Y+ +NS K    Y+
Sbjct: 497 MYEANWMDLAQKGHIAKVQCAEVWCAMTTEFYNEYLRENSRKRMLLYI 544


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 350 NTSSTKINARGVTRPKITTMIRLTKPNSQNQYFFTNSHTFFFTVFLSTE 496
           NTS +K +     +   TT + LT   + N Y  TNS     T+  +TE
Sbjct: 99  NTSISKPSQTATPQNTNTTQVSLTNGTTTNSYSNTNSLPITDTINGTTE 147


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 202 RPYS*AKGWTVFNFPNPKNIIYKQKFIKKLLYLCTHARSYTSL 330
           RP +   G  V + P  K I Y   F++ +L LC  A++ TSL
Sbjct: 75  RPGNIIGGRVVHDCPTTKGIGY---FLEPILILCLFAKTPTSL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,132
Number of Sequences: 5004
Number of extensions: 45751
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)